Hb_000340_150

Information

Type -
Description -
Location Contig340: 162322-167643
Sequence    

Annotation

kegg
ID rcu:RCOM_0648280
description hypothetical protein
nr
ID KDP21504.1
description hypothetical protein JCGZ_21975 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21975 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35533: 162539-167643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_150 0.0 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
2 Hb_004375_050 0.088584212 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000529_180 0.0899860736 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
4 Hb_000462_090 0.0946343733 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
5 Hb_001277_100 0.0967825212 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
6 Hb_000811_070 0.0980662806 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
7 Hb_002078_340 0.0985486064 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
8 Hb_001195_450 0.0996677921 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
9 Hb_000282_080 0.0998257188 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001138_060 0.1017009394 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
11 Hb_008421_020 0.1019164708 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
12 Hb_005511_140 0.1023979234 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
13 Hb_009778_060 0.1034426933 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
14 Hb_001195_770 0.1036751567 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
15 Hb_002660_190 0.1045422771 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
16 Hb_000941_100 0.1045937277 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
17 Hb_000107_430 0.1075045071 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
18 Hb_000167_110 0.1078905545 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_000482_040 0.1096721932 - - Protein YME1, putative [Ricinus communis]
20 Hb_003053_110 0.1098096386 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000340_150 Hb_000340_150 Hb_004375_050 Hb_004375_050 Hb_000340_150--Hb_004375_050 Hb_000529_180 Hb_000529_180 Hb_000340_150--Hb_000529_180 Hb_000462_090 Hb_000462_090 Hb_000340_150--Hb_000462_090 Hb_001277_100 Hb_001277_100 Hb_000340_150--Hb_001277_100 Hb_000811_070 Hb_000811_070 Hb_000340_150--Hb_000811_070 Hb_002078_340 Hb_002078_340 Hb_000340_150--Hb_002078_340 Hb_002290_030 Hb_002290_030 Hb_004375_050--Hb_002290_030 Hb_001629_090 Hb_001629_090 Hb_004375_050--Hb_001629_090 Hb_005147_080 Hb_005147_080 Hb_004375_050--Hb_005147_080 Hb_000318_130 Hb_000318_130 Hb_004375_050--Hb_000318_130 Hb_001195_770 Hb_001195_770 Hb_004375_050--Hb_001195_770 Hb_002675_250 Hb_002675_250 Hb_000529_180--Hb_002675_250 Hb_010863_050 Hb_010863_050 Hb_000529_180--Hb_010863_050 Hb_008705_020 Hb_008705_020 Hb_000529_180--Hb_008705_020 Hb_000167_110 Hb_000167_110 Hb_000529_180--Hb_000167_110 Hb_001438_010 Hb_001438_010 Hb_000529_180--Hb_001438_010 Hb_000046_540 Hb_000046_540 Hb_000529_180--Hb_000046_540 Hb_001584_200 Hb_001584_200 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230 Hb_000107_430 Hb_000107_430 Hb_001277_100--Hb_000107_430 Hb_001277_100--Hb_000811_070 Hb_006907_060 Hb_006907_060 Hb_001277_100--Hb_006907_060 Hb_007192_030 Hb_007192_030 Hb_001277_100--Hb_007192_030 Hb_011671_260 Hb_011671_260 Hb_001277_100--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001277_100--Hb_000086_080 Hb_006846_150 Hb_006846_150 Hb_000811_070--Hb_006846_150 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_002078_340--Hb_000046_540 Hb_000482_040 Hb_000482_040 Hb_002078_340--Hb_000482_040 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5628 14.4088 29.6165 18.1898 15.3458 10.4276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6835 21.9282 25.748 12.7963 57.5835

CAGE analysis