Hb_004375_050

Information

Type -
Description -
Location Contig4375: 38417-47670
Sequence    

Annotation

kegg
ID rcu:RCOM_1179440
description guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative (EC:2.7.6.5)
nr
ID XP_012082817.1
description PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID P0DKG8
description Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana GN=RSH1 PE=1 SV=1
trembl
ID A0A067K7G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13966 PE=4 SV=1
Gene Ontology
ID GO:0009507
description gtp diphosphokinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42520: 38501-47578 , PASA_asmbl_42521: 44666-45082 , PASA_asmbl_42523: 47017-47127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_050 0.0 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_002290_030 0.0562293707 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
3 Hb_001629_090 0.0642071308 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005147_080 0.0807545269 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000340_150 0.088584212 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
6 Hb_000318_130 0.0891305603 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001195_770 0.0893414565 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
8 Hb_005511_140 0.0920970502 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
9 Hb_022378_010 0.0952559847 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
10 Hb_001195_450 0.1010407499 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
11 Hb_000941_100 0.1041672105 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
12 Hb_002762_110 0.1042890506 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002660_190 0.1056948625 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
14 Hb_000529_180 0.1062868814 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
15 Hb_001214_050 0.1064785397 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
16 Hb_000983_070 0.1073305248 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001438_010 0.1081407224 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
18 Hb_000208_190 0.1085092982 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
19 Hb_003053_110 0.1096889103 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
20 Hb_009778_060 0.1097155926 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]

Gene co-expression network

sample Hb_004375_050 Hb_004375_050 Hb_002290_030 Hb_002290_030 Hb_004375_050--Hb_002290_030 Hb_001629_090 Hb_001629_090 Hb_004375_050--Hb_001629_090 Hb_005147_080 Hb_005147_080 Hb_004375_050--Hb_005147_080 Hb_000340_150 Hb_000340_150 Hb_004375_050--Hb_000340_150 Hb_000318_130 Hb_000318_130 Hb_004375_050--Hb_000318_130 Hb_001195_770 Hb_001195_770 Hb_004375_050--Hb_001195_770 Hb_002290_030--Hb_001629_090 Hb_002290_030--Hb_005147_080 Hb_000983_070 Hb_000983_070 Hb_002290_030--Hb_000983_070 Hb_002290_030--Hb_000318_130 Hb_003029_020 Hb_003029_020 Hb_002290_030--Hb_003029_020 Hb_001629_090--Hb_000983_070 Hb_001711_120 Hb_001711_120 Hb_001629_090--Hb_001711_120 Hb_003462_180 Hb_003462_180 Hb_001629_090--Hb_003462_180 Hb_002762_110 Hb_002762_110 Hb_001629_090--Hb_002762_110 Hb_010344_020 Hb_010344_020 Hb_005147_080--Hb_010344_020 Hb_011861_050 Hb_011861_050 Hb_005147_080--Hb_011861_050 Hb_189003_060 Hb_189003_060 Hb_005147_080--Hb_189003_060 Hb_005147_080--Hb_000318_130 Hb_000529_180 Hb_000529_180 Hb_000340_150--Hb_000529_180 Hb_000462_090 Hb_000462_090 Hb_000340_150--Hb_000462_090 Hb_001277_100 Hb_001277_100 Hb_000340_150--Hb_001277_100 Hb_000811_070 Hb_000811_070 Hb_000340_150--Hb_000811_070 Hb_002078_340 Hb_002078_340 Hb_000340_150--Hb_002078_340 Hb_003941_030 Hb_003941_030 Hb_000318_130--Hb_003941_030 Hb_001138_060 Hb_001138_060 Hb_000318_130--Hb_001138_060 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190 Hb_008705_020 Hb_008705_020 Hb_001195_770--Hb_008705_020 Hb_003053_110 Hb_003053_110 Hb_001195_770--Hb_003053_110 Hb_000941_100 Hb_000941_100 Hb_001195_770--Hb_000941_100 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_006907_060 Hb_006907_060 Hb_001195_770--Hb_006907_060 Hb_001195_770--Hb_002762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.3792 9.87286 18.5188 10.3332 4.21104 5.21999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.63355 10.8065 11.5459 6.19949 32.8492

CAGE analysis