Hb_001138_060

Information

Type -
Description -
Location Contig1138: 83699-98473
Sequence    

Annotation

kegg
ID cic:CICLE_v10028086mg
description hypothetical protein
nr
ID XP_006422941.1
description hypothetical protein CICLE_v10028086mg [Citrus clementina]
swissprot
ID A5F120
description Na(+)/H(+) antiporter NhaD OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) GN=nhaD PE=1 SV=1
trembl
ID V4SGQ8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028086mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description na+ h+

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04129: 83701-98487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001138_060 0.0 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
2 Hb_001723_060 0.0864781268 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
3 Hb_002762_110 0.090159935 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009778_060 0.09243713 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
5 Hb_001195_450 0.0950181378 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
6 Hb_000318_130 0.1002615305 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000077_150 0.1002684146 - - PREDICTED: riboflavin synthase [Jatropha curcas]
8 Hb_004644_030 0.1016637525 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
9 Hb_000340_150 0.1017009394 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
10 Hb_001214_050 0.1020516323 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
11 Hb_000622_290 0.1028464756 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
12 Hb_000482_040 0.1044382008 - - Protein YME1, putative [Ricinus communis]
13 Hb_002078_340 0.1044531751 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
14 Hb_001946_380 0.1046232396 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
15 Hb_000107_430 0.1074733505 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
16 Hb_001863_020 0.1096333284 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
17 Hb_000983_070 0.1152544728 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001399_010 0.118039205 - - ATP binding protein, putative [Ricinus communis]
19 Hb_004375_050 0.1192422366 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001195_770 0.1192607868 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_001138_060 Hb_001138_060 Hb_001723_060 Hb_001723_060 Hb_001138_060--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001138_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001138_060--Hb_009778_060 Hb_001195_450 Hb_001195_450 Hb_001138_060--Hb_001195_450 Hb_000318_130 Hb_000318_130 Hb_001138_060--Hb_000318_130 Hb_000077_150 Hb_000077_150 Hb_001138_060--Hb_000077_150 Hb_001723_060--Hb_001195_450 Hb_001723_060--Hb_002762_110 Hb_001723_060--Hb_009778_060 Hb_001214_050 Hb_001214_050 Hb_001723_060--Hb_001214_050 Hb_000482_040 Hb_000482_040 Hb_001723_060--Hb_000482_040 Hb_004644_030 Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_002762_110--Hb_000077_150 Hb_002762_110--Hb_001214_050 Hb_009778_060--Hb_000482_040 Hb_009778_060--Hb_001214_050 Hb_009778_060--Hb_001195_450 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060 Hb_001195_450--Hb_002762_110 Hb_005511_140 Hb_005511_140 Hb_001195_450--Hb_005511_140 Hb_012150_030 Hb_012150_030 Hb_001195_450--Hb_012150_030 Hb_000282_080 Hb_000282_080 Hb_001195_450--Hb_000282_080 Hb_004375_050 Hb_004375_050 Hb_000318_130--Hb_004375_050 Hb_003941_030 Hb_003941_030 Hb_000318_130--Hb_003941_030 Hb_005147_080 Hb_005147_080 Hb_000318_130--Hb_005147_080 Hb_002290_030 Hb_002290_030 Hb_000318_130--Hb_002290_030 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190 Hb_000077_150--Hb_004644_030 Hb_000077_150--Hb_001214_050 Hb_003106_190 Hb_003106_190 Hb_000077_150--Hb_003106_190 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340 Hb_002811_010 Hb_002811_010 Hb_000077_150--Hb_002811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54236 5.01267 8.66887 9.31117 3.30017 3.40616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.79735 8.67475 12.0863 8.06805 25.241

CAGE analysis