Hb_002374_250

Information

Type -
Description -
Location Contig2374: 220133-224318
Sequence    

Annotation

kegg
ID rcu:RCOM_0563800
description hypothetical protein
nr
ID XP_002520346.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2X7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0563800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24877: 220354-223263 , PASA_asmbl_24878: 223683-224013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009778_060 0.0851663499 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
3 Hb_005511_150 0.0870685681 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
4 Hb_000676_200 0.0934090013 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
5 Hb_003089_020 0.096821948 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
6 Hb_030131_030 0.099399631 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
7 Hb_009178_060 0.1030773135 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002631_250 0.1078824907 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
9 Hb_001214_050 0.1119598216 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
10 Hb_003475_020 0.1129892318 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
11 Hb_001449_070 0.1158172759 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004218_190 0.1181700093 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
13 Hb_000318_130 0.1201178368 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000635_060 0.1204601652 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
15 Hb_000365_240 0.1234114122 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
16 Hb_013749_050 0.1239230703 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
17 Hb_003124_120 0.1241788953 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
18 Hb_001790_080 0.1254927188 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_000482_040 0.1268656861 - - Protein YME1, putative [Ricinus communis]
20 Hb_001163_060 0.128951876 - - neutral/alkaline invertase [Manihot esculenta]

Gene co-expression network

sample Hb_002374_250 Hb_002374_250 Hb_009778_060 Hb_009778_060 Hb_002374_250--Hb_009778_060 Hb_005511_150 Hb_005511_150 Hb_002374_250--Hb_005511_150 Hb_000676_200 Hb_000676_200 Hb_002374_250--Hb_000676_200 Hb_003089_020 Hb_003089_020 Hb_002374_250--Hb_003089_020 Hb_030131_030 Hb_030131_030 Hb_002374_250--Hb_030131_030 Hb_009178_060 Hb_009178_060 Hb_002374_250--Hb_009178_060 Hb_000482_040 Hb_000482_040 Hb_009778_060--Hb_000482_040 Hb_001214_050 Hb_001214_050 Hb_009778_060--Hb_001214_050 Hb_001195_450 Hb_001195_450 Hb_009778_060--Hb_001195_450 Hb_001723_060 Hb_001723_060 Hb_009778_060--Hb_001723_060 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060 Hb_005511_150--Hb_009178_060 Hb_001009_260 Hb_001009_260 Hb_005511_150--Hb_001009_260 Hb_000025_500 Hb_000025_500 Hb_005511_150--Hb_000025_500 Hb_013749_050 Hb_013749_050 Hb_005511_150--Hb_013749_050 Hb_002232_390 Hb_002232_390 Hb_005511_150--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_000676_200--Hb_003475_020 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_006274_050 Hb_006274_050 Hb_003089_020--Hb_006274_050 Hb_012098_070 Hb_012098_070 Hb_003089_020--Hb_012098_070 Hb_003089_020--Hb_003475_020 Hb_000110_270 Hb_000110_270 Hb_003089_020--Hb_000110_270 Hb_003089_020--Hb_000676_200 Hb_030131_030--Hb_002631_250 Hb_008511_140 Hb_008511_140 Hb_030131_030--Hb_008511_140 Hb_000069_490 Hb_000069_490 Hb_030131_030--Hb_000069_490 Hb_030131_030--Hb_003089_020 Hb_009178_060--Hb_002232_390 Hb_000803_320 Hb_000803_320 Hb_009178_060--Hb_000803_320 Hb_005914_040 Hb_005914_040 Hb_009178_060--Hb_005914_040 Hb_011364_020 Hb_011364_020 Hb_009178_060--Hb_011364_020 Hb_005250_010 Hb_005250_010 Hb_009178_060--Hb_005250_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.696643 2.5173 2.27161 1.98176 1.28452 2.04288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48942 1.84074 2.68804 2.77862 8.10729

CAGE analysis