Hb_008511_140

Information

Type transcription factor
Description TF Family: mTERF
Location Contig8511: 123531-127386
Sequence    

Annotation

kegg
ID rcu:RCOM_1675250
description hypothetical protein
nr
ID XP_012070059.1
description PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
swissprot
ID Q49AM1
description Transcription termination factor 2, mitochondrial OS=Homo sapiens GN=MTERF2 PE=1 SV=2
trembl
ID A0A067LP57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10094 PE=4 SV=1
Gene Ontology
ID GO:0005739
description embryo defective 2219

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60431: 123999-125652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_140 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
2 Hb_052946_010 0.0967731104 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
3 Hb_000529_140 0.1023554285 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000495_080 0.1060923346 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
5 Hb_030131_030 0.1107824409 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
6 Hb_001080_030 0.1184454729 - - AMP dependent ligase, putative [Ricinus communis]
7 Hb_000676_200 0.1184897018 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
8 Hb_000731_290 0.1247258888 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003226_190 0.1280976993 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
10 Hb_000025_500 0.1324174138 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_000352_220 0.1332172611 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_000390_030 0.1360710234 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
13 Hb_078477_060 0.1366965174 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
14 Hb_005523_010 0.1393425767 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
15 Hb_016760_010 0.139494961 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_002374_250 0.1397985067 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010757_030 0.1399270077 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_011364_020 0.140470957 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
19 Hb_000392_160 0.1432040853 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
20 Hb_000404_040 0.1438609004 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008511_140 Hb_008511_140 Hb_052946_010 Hb_052946_010 Hb_008511_140--Hb_052946_010 Hb_000529_140 Hb_000529_140 Hb_008511_140--Hb_000529_140 Hb_000495_080 Hb_000495_080 Hb_008511_140--Hb_000495_080 Hb_030131_030 Hb_030131_030 Hb_008511_140--Hb_030131_030 Hb_001080_030 Hb_001080_030 Hb_008511_140--Hb_001080_030 Hb_000676_200 Hb_000676_200 Hb_008511_140--Hb_000676_200 Hb_000731_290 Hb_000731_290 Hb_052946_010--Hb_000731_290 Hb_052946_010--Hb_001080_030 Hb_000025_500 Hb_000025_500 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_003029_140 Hb_003029_140 Hb_052946_010--Hb_003029_140 Hb_000390_030 Hb_000390_030 Hb_000529_140--Hb_000390_030 Hb_005523_010 Hb_005523_010 Hb_000529_140--Hb_005523_010 Hb_010757_030 Hb_010757_030 Hb_000529_140--Hb_010757_030 Hb_000529_140--Hb_000495_080 Hb_000640_260 Hb_000640_260 Hb_000529_140--Hb_000640_260 Hb_000352_220 Hb_000352_220 Hb_000495_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000495_080--Hb_003226_190 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_007002_010 Hb_007002_010 Hb_000495_080--Hb_007002_010 Hb_000495_080--Hb_000640_260 Hb_002631_250 Hb_002631_250 Hb_030131_030--Hb_002631_250 Hb_030131_030--Hb_000676_200 Hb_002374_250 Hb_002374_250 Hb_030131_030--Hb_002374_250 Hb_000069_490 Hb_000069_490 Hb_030131_030--Hb_000069_490 Hb_003089_020 Hb_003089_020 Hb_030131_030--Hb_003089_020 Hb_001080_030--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_001080_030--Hb_003226_190 Hb_003475_020 Hb_003475_020 Hb_000676_200--Hb_003475_020 Hb_000676_200--Hb_002374_250 Hb_000676_200--Hb_002631_250 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21825 3.94914 1.93935 4.25493 1.84388 2.10923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36758 1.84028 2.58059 5.11966 16.4669

CAGE analysis