Hb_159809_090

Information

Type rubber biosynthesis
Description Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Location Contig159809: 126614-130982
Sequence    

Annotation

kegg
ID rcu:RCOM_0938310
description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative (EC:1.17.1.2)
nr
ID ACG55683.1
description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
swissprot
ID Q94B35
description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1
trembl
ID B5AZS1
description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0046429
description 4-hydroxy-3-methylbut-2-enyl diphosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14256: 126650-130987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159809_090 0.0 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
2 Hb_018043_020 0.0640517181 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
3 Hb_001425_010 0.0933330445 - - sugar transporter, putative [Ricinus communis]
4 Hb_003029_140 0.1017990346 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_008616_040 0.1041821875 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
6 Hb_052946_010 0.1067746314 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
7 Hb_007576_180 0.1075200944 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
8 Hb_001890_010 0.1091535331 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_010984_010 0.1097738326 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001250_020 0.1100672431 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
11 Hb_013749_050 0.1109624809 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
12 Hb_004111_030 0.1110320006 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
13 Hb_001080_030 0.1114789849 - - AMP dependent ligase, putative [Ricinus communis]
14 Hb_000617_250 0.1124897163 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
15 Hb_000640_260 0.1142348696 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
16 Hb_004629_030 0.1146723558 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_003124_120 0.1152454915 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
18 Hb_000997_140 0.1159801597 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
19 Hb_001677_220 0.1162473993 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
20 Hb_003142_010 0.1173242598 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]

Gene co-expression network

sample Hb_159809_090 Hb_159809_090 Hb_018043_020 Hb_018043_020 Hb_159809_090--Hb_018043_020 Hb_001425_010 Hb_001425_010 Hb_159809_090--Hb_001425_010 Hb_003029_140 Hb_003029_140 Hb_159809_090--Hb_003029_140 Hb_008616_040 Hb_008616_040 Hb_159809_090--Hb_008616_040 Hb_052946_010 Hb_052946_010 Hb_159809_090--Hb_052946_010 Hb_007576_180 Hb_007576_180 Hb_159809_090--Hb_007576_180 Hb_018043_020--Hb_003029_140 Hb_001250_020 Hb_001250_020 Hb_018043_020--Hb_001250_020 Hb_018043_020--Hb_008616_040 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_001425_010--Hb_008616_040 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003549_050 Hb_003549_050 Hb_001425_010--Hb_003549_050 Hb_001425_010--Hb_003029_140 Hb_003029_140--Hb_001250_020 Hb_003029_140--Hb_008616_040 Hb_021409_190 Hb_021409_190 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_003029_140--Hb_052946_010 Hb_008616_040--Hb_001250_020 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_008616_040--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_008616_040--Hb_010984_010 Hb_000731_290 Hb_000731_290 Hb_052946_010--Hb_000731_290 Hb_001080_030 Hb_001080_030 Hb_052946_010--Hb_001080_030 Hb_000025_500 Hb_000025_500 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_008511_140 Hb_008511_140 Hb_052946_010--Hb_008511_140 Hb_000803_220 Hb_000803_220 Hb_007576_180--Hb_000803_220 Hb_007576_180--Hb_010984_010 Hb_007576_180--Hb_004629_030 Hb_004837_020 Hb_004837_020 Hb_007576_180--Hb_004837_020 Hb_007576_180--Hb_001425_010 Hb_007576_180--Hb_018043_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.7747 151.005 209.179 116.494 56.0595 65.6677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.5165 39.9649 50.7422 156.222 513.821

CAGE analysis