Hb_021409_190

Information

Type -
Description -
Location Contig21409: 140215-143871
Sequence    

Annotation

kegg
ID tcc:TCM_016516
description Heat shock protein 70 (Hsp 70) family protein
nr
ID XP_012086670.1
description PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
swissprot
ID Q03685
description Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1
trembl
ID A0A067JZ43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20411 PE=3 SV=1
Gene Ontology
ID GO:0005783
description luminal-binding 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22134: 140215-143896
cDNA
(Sanger)
(ID:Location)		 015_M13.ab1: 142462-143896

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_190 0.0 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
2 Hb_008616_040 0.0844581437 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
3 Hb_000640_260 0.0853319884 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
4 Hb_003029_140 0.0927101068 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_018043_020 0.0965310768 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
6 Hb_001109_160 0.1042438932 - - DNA binding protein, putative [Ricinus communis]
7 Hb_002811_190 0.1072880488 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
8 Hb_004041_030 0.1082987735 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
9 Hb_005914_210 0.1104284498 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
10 Hb_052946_010 0.1111506955 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
11 Hb_001250_020 0.112164904 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
12 Hb_010984_010 0.113369116 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002783_070 0.1137660446 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
14 Hb_001009_260 0.1151853557 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
15 Hb_002399_020 0.1159874776 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
16 Hb_166127_030 0.1178702597 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000579_040 0.1188583247 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
18 Hb_000352_220 0.1192877701 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_159809_090 0.1194193136 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
20 Hb_002150_020 0.1210925496 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_021409_190 Hb_021409_190 Hb_008616_040 Hb_008616_040 Hb_021409_190--Hb_008616_040 Hb_000640_260 Hb_000640_260 Hb_021409_190--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_021409_190--Hb_003029_140 Hb_018043_020 Hb_018043_020 Hb_021409_190--Hb_018043_020 Hb_001109_160 Hb_001109_160 Hb_021409_190--Hb_001109_160 Hb_002811_190 Hb_002811_190 Hb_021409_190--Hb_002811_190 Hb_008616_040--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_008616_040--Hb_001250_020 Hb_008616_040--Hb_003029_140 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_010984_010 Hb_010984_010 Hb_008616_040--Hb_010984_010 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_166127_030 Hb_166127_030 Hb_000640_260--Hb_166127_030 Hb_000934_020 Hb_000934_020 Hb_000640_260--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_000640_260--Hb_000189_250 Hb_000640_260--Hb_003029_140 Hb_003029_140--Hb_018043_020 Hb_003029_140--Hb_001250_020 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_018043_020--Hb_001250_020 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_006916_030 Hb_006916_030 Hb_001109_160--Hb_006916_030 Hb_001109_160--Hb_008616_040 Hb_001109_160--Hb_001250_020 Hb_000066_040 Hb_000066_040 Hb_001109_160--Hb_000066_040 Hb_001109_160--Hb_003029_140 Hb_000906_070 Hb_000906_070 Hb_001109_160--Hb_000906_070 Hb_002811_190--Hb_001425_010 Hb_000977_150 Hb_000977_150 Hb_002811_190--Hb_000977_150 Hb_001405_080 Hb_001405_080 Hb_002811_190--Hb_001405_080 Hb_002811_190--Hb_000640_260 Hb_000329_080 Hb_000329_080 Hb_002811_190--Hb_000329_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.532 91.7877 173.78 144.856 62.8529 38.7609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.253 35.3408 71.6573 118.146 536.424

CAGE analysis