Hb_001250_020

Information

Type -
Description -
Location Contig1250: 15855-17660
Sequence    

Annotation

kegg
ID tcc:TCM_010414
description RNA-binding CRS1 / YhbY (CRM) domain-containing protein
nr
ID XP_012085424.1
description PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
swissprot
ID Q9LDA9
description CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1
trembl
ID A0A067JRN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17774 PE=4 SV=1
Gene Ontology
ID GO:0009570
description crs2-associated factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07629: 15708-29668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_020 0.0 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
2 Hb_018043_020 0.0687169959 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
3 Hb_008616_040 0.0715318365 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
4 Hb_003029_140 0.0755002978 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_001109_160 0.0906074457 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000762_110 0.0964293423 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
7 Hb_010984_010 0.0977772006 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000997_140 0.1025705607 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
9 Hb_002928_030 0.102821308 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
10 Hb_006916_030 0.1075321775 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
11 Hb_000976_130 0.1080208719 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
12 Hb_005914_210 0.1085989479 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
13 Hb_159809_090 0.1100672431 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
14 Hb_021409_190 0.112164904 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
15 Hb_016760_010 0.1136178758 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_014361_110 0.1145068229 - - RNA binding protein, putative [Ricinus communis]
17 Hb_000376_210 0.1161654076 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
18 Hb_004629_030 0.1165533771 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000537_070 0.1172749876 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
20 Hb_003929_220 0.1176797811 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001250_020 Hb_001250_020 Hb_018043_020 Hb_018043_020 Hb_001250_020--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001250_020--Hb_008616_040 Hb_003029_140 Hb_003029_140 Hb_001250_020--Hb_003029_140 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010 Hb_018043_020--Hb_003029_140 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_018043_020--Hb_008616_040 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_008616_040--Hb_003029_140 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_021409_190 Hb_021409_190 Hb_008616_040--Hb_021409_190 Hb_008616_040--Hb_010984_010 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_006916_030 Hb_006916_030 Hb_001109_160--Hb_006916_030 Hb_001109_160--Hb_008616_040 Hb_000066_040 Hb_000066_040 Hb_001109_160--Hb_000066_040 Hb_001109_160--Hb_003029_140 Hb_000906_070 Hb_000906_070 Hb_001109_160--Hb_000906_070 Hb_005914_210 Hb_005914_210 Hb_000762_110--Hb_005914_210 Hb_000376_210 Hb_000376_210 Hb_000762_110--Hb_000376_210 Hb_002928_030 Hb_002928_030 Hb_000762_110--Hb_002928_030 Hb_000120_860 Hb_000120_860 Hb_000762_110--Hb_000120_860 Hb_000579_040 Hb_000579_040 Hb_000762_110--Hb_000579_040 Hb_000803_220 Hb_000803_220 Hb_010984_010--Hb_000803_220 Hb_000803_240 Hb_000803_240 Hb_010984_010--Hb_000803_240 Hb_007576_180 Hb_007576_180 Hb_010984_010--Hb_007576_180 Hb_010984_010--Hb_018043_020 Hb_016760_010 Hb_016760_010 Hb_010984_010--Hb_016760_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98331 6.56768 8.9069 6.45061 2.42827 3.24978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53557 1.70515 1.7099 3.5354 22.3785

CAGE analysis