Hb_000579_040

Information

Type -
Description -
Location Contig579: 99338-103907
Sequence    

Annotation

kegg
ID rcu:RCOM_1595750
description GTP-binding protein hflx, putative
nr
ID XP_012071935.1
description PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
swissprot
ID D9R4W7
description GTPase HflX OS=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) GN=hflX PE=3 SV=1
trembl
ID A0A067L390
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04484 PE=3 SV=1
Gene Ontology
ID GO:0009507
description gtp-binding protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49765: 99369-104052 , PASA_asmbl_49766: 99620-104052 , PASA_asmbl_49767: 99621-104052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_040 0.0 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
2 Hb_032631_070 0.0484034532 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
3 Hb_025194_090 0.075089514 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
4 Hb_002075_030 0.0766619948 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
5 Hb_138585_030 0.0789175694 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
6 Hb_001307_100 0.0836993364 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_001143_100 0.0863252439 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
8 Hb_002150_020 0.0865743369 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_002044_160 0.0891009779 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
10 Hb_007441_310 0.0907337036 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
11 Hb_004629_030 0.0937481209 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001009_260 0.0948379723 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
13 Hb_002928_030 0.0963389918 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
14 Hb_003124_120 0.0972662015 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
15 Hb_000510_190 0.097286125 - - glutathione reductase [Hevea brasiliensis]
16 Hb_000496_130 0.0987122622 - - PREDICTED: fructokinase-1 [Jatropha curcas]
17 Hb_009288_040 0.0988365828 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
18 Hb_003994_080 0.100135125 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
19 Hb_018043_020 0.1001461515 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
20 Hb_004041_030 0.100826056 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000579_040 Hb_000579_040 Hb_032631_070 Hb_032631_070 Hb_000579_040--Hb_032631_070 Hb_025194_090 Hb_025194_090 Hb_000579_040--Hb_025194_090 Hb_002075_030 Hb_002075_030 Hb_000579_040--Hb_002075_030 Hb_138585_030 Hb_138585_030 Hb_000579_040--Hb_138585_030 Hb_001307_100 Hb_001307_100 Hb_000579_040--Hb_001307_100 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100 Hb_007441_310 Hb_007441_310 Hb_032631_070--Hb_007441_310 Hb_032631_070--Hb_002075_030 Hb_002150_020 Hb_002150_020 Hb_032631_070--Hb_002150_020 Hb_032631_070--Hb_138585_030 Hb_000585_110 Hb_000585_110 Hb_032631_070--Hb_000585_110 Hb_003029_020 Hb_003029_020 Hb_025194_090--Hb_003029_020 Hb_004502_010 Hb_004502_010 Hb_025194_090--Hb_004502_010 Hb_004629_030 Hb_004629_030 Hb_025194_090--Hb_004629_030 Hb_002928_030 Hb_002928_030 Hb_025194_090--Hb_002928_030 Hb_000496_130 Hb_000496_130 Hb_025194_090--Hb_000496_130 Hb_002075_030--Hb_001307_100 Hb_002075_030--Hb_007441_310 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_001307_100--Hb_068804_090 Hb_000088_260 Hb_000088_260 Hb_001307_100--Hb_000088_260 Hb_001307_100--Hb_032631_070 Hb_001307_100--Hb_138585_030 Hb_001143_100--Hb_000496_130 Hb_000510_190 Hb_000510_190 Hb_001143_100--Hb_000510_190 Hb_001143_100--Hb_032631_070 Hb_003355_010 Hb_003355_010 Hb_001143_100--Hb_003355_010 Hb_008375_010 Hb_008375_010 Hb_001143_100--Hb_008375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84905 9.72235 27.3072 18.0109 5.60225 5.55296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.13968 6.16063 6.95527 11.7671 42.8701

CAGE analysis