Hb_010128_020

Information

Type -
Description -
Location Contig10128: 9026-13388
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24210g
description POPTRDRAFT_706239; hypothetical protein
nr
ID XP_002298376.1
description hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
swissprot
ID Q2KIP8
description Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Bos taurus GN=HACD2 PE=2 SV=2
trembl
ID B9GES5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00638: 8952-13351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010128_020 0.0 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
2 Hb_003029_020 0.0787646755 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
3 Hb_003124_120 0.0795582689 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
4 Hb_000983_070 0.0813561048 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002075_030 0.0847424897 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
6 Hb_000816_200 0.0955187388 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
7 Hb_000112_060 0.0979070939 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
8 Hb_016461_030 0.1000274473 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_003171_030 0.1020742686 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
10 Hb_189003_060 0.102104646 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_036790_120 0.1034122927 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
12 Hb_000548_060 0.1072051664 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
13 Hb_007426_170 0.1083464555 transcription factor TF Family: TCP -
14 Hb_002290_030 0.1100119025 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
15 Hb_000594_100 0.1108952992 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
16 Hb_029920_030 0.11201199 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
17 Hb_001890_010 0.1121835318 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_001373_130 0.1133785824 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001792_030 0.1153487191 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
20 Hb_025194_090 0.1167282633 - - coproporphyrinogen III oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010128_020 Hb_010128_020 Hb_003029_020 Hb_003029_020 Hb_010128_020--Hb_003029_020 Hb_003124_120 Hb_003124_120 Hb_010128_020--Hb_003124_120 Hb_000983_070 Hb_000983_070 Hb_010128_020--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_010128_020--Hb_002075_030 Hb_000816_200 Hb_000816_200 Hb_010128_020--Hb_000816_200 Hb_000112_060 Hb_000112_060 Hb_010128_020--Hb_000112_060 Hb_025194_090 Hb_025194_090 Hb_003029_020--Hb_025194_090 Hb_003029_020--Hb_002075_030 Hb_002542_160 Hb_002542_160 Hb_003029_020--Hb_002542_160 Hb_003171_030 Hb_003171_030 Hb_003029_020--Hb_003171_030 Hb_001438_010 Hb_001438_010 Hb_003029_020--Hb_001438_010 Hb_003124_120--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_003124_120--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_003124_120--Hb_001677_220 Hb_003124_120--Hb_000983_070 Hb_003124_120--Hb_002075_030 Hb_001898_180 Hb_001898_180 Hb_000983_070--Hb_001898_180 Hb_000983_070--Hb_000816_200 Hb_001629_090 Hb_001629_090 Hb_000983_070--Hb_001629_090 Hb_002053_010 Hb_002053_010 Hb_000983_070--Hb_002053_010 Hb_032631_070 Hb_032631_070 Hb_002075_030--Hb_032631_070 Hb_001307_100 Hb_001307_100 Hb_002075_030--Hb_001307_100 Hb_000579_040 Hb_000579_040 Hb_002075_030--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_002075_030--Hb_007441_310 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_000816_200--Hb_007441_310 Hb_036790_120 Hb_036790_120 Hb_000112_060--Hb_036790_120 Hb_007426_170 Hb_007426_170 Hb_000112_060--Hb_007426_170 Hb_005276_010 Hb_005276_010 Hb_000112_060--Hb_005276_010 Hb_000152_480 Hb_000152_480 Hb_000112_060--Hb_000152_480 Hb_000112_060--Hb_003029_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53573 2.64043 10.6001 4.24305 1.89826 2.44556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26548 5.33417 3.12873 5.00443 20.4609

CAGE analysis