Hb_002053_010

Information

Type -
Description -
Location Contig2053: 20017-22650
Sequence    

Annotation

kegg
ID rcu:RCOM_1681240
description ATP-dependent clp protease, putative
nr
ID XP_012087076.1
description PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8GW78
description Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1
trembl
ID A0A067JRV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20734 PE=4 SV=1
Gene Ontology
ID GO:0009532
description clp protease-related protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21149: 20086-22638
cDNA
(Sanger)
(ID:Location)		 005_J07.ab1: 20093-22469 , 039_N11.ab1: 20642-22638 , 052_E16.ab1: 20093-22409

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_010 0.0 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
2 Hb_001789_200 0.0525313082 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
3 Hb_008695_200 0.0744679464 - - Protein grpE, putative [Ricinus communis]
4 Hb_016219_030 0.0840197969 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001369_790 0.0855296672 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
6 Hb_004440_060 0.0859803825 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_000086_080 0.0871032717 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000388_060 0.0901154309 - - fructokinase [Manihot esculenta]
9 Hb_001711_120 0.0917626049 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
10 Hb_001898_180 0.0924038739 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
11 Hb_000983_070 0.0946447957 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001946_160 0.0947693108 - - putative chaperon P13.9 [Castanea sativa]
13 Hb_000816_200 0.0978556725 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
14 Hb_001124_180 0.0995456451 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
15 Hb_004644_030 0.1001979742 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
16 Hb_001195_770 0.1017160473 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
17 Hb_002762_110 0.1027377912 - - conserved hypothetical protein [Ricinus communis]
18 Hb_042083_040 0.1031511387 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006907_060 0.1032486129 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
20 Hb_007441_310 0.103437081 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002053_010 Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_000388_060 Hb_000388_060 Hb_001789_200--Hb_000388_060 Hb_001789_200--Hb_001369_790 Hb_001789_200--Hb_016219_030 Hb_004644_030 Hb_004644_030 Hb_001789_200--Hb_004644_030 Hb_007441_310 Hb_007441_310 Hb_001789_200--Hb_007441_310 Hb_003994_160 Hb_003994_160 Hb_008695_200--Hb_003994_160 Hb_008695_200--Hb_000086_080 Hb_008695_200--Hb_001369_790 Hb_003053_110 Hb_003053_110 Hb_008695_200--Hb_003053_110 Hb_007192_030 Hb_007192_030 Hb_008695_200--Hb_007192_030 Hb_000189_450 Hb_000189_450 Hb_016219_030--Hb_000189_450 Hb_000438_140 Hb_000438_140 Hb_016219_030--Hb_000438_140 Hb_000032_500 Hb_000032_500 Hb_016219_030--Hb_000032_500 Hb_001105_040 Hb_001105_040 Hb_016219_030--Hb_001105_040 Hb_001369_790--Hb_007192_030 Hb_001369_790--Hb_004440_060 Hb_000392_550 Hb_000392_550 Hb_001369_790--Hb_000392_550 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_000317_260 Hb_000317_260 Hb_004440_060--Hb_000317_260 Hb_001578_020 Hb_001578_020 Hb_004440_060--Hb_001578_020 Hb_007534_050 Hb_007534_050 Hb_004440_060--Hb_007534_050 Hb_004440_060--Hb_004644_030 Hb_000086_080--Hb_007192_030 Hb_073973_090 Hb_073973_090 Hb_000086_080--Hb_073973_090 Hb_003266_030 Hb_003266_030 Hb_000086_080--Hb_003266_030 Hb_011671_260 Hb_011671_260 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_000086_080--Hb_003053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.38287 9.93632 38.9776 33.226 7.04478 10.3676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7394 28.2332 12.0606 14.788 60.0948

CAGE analysis