Hb_000388_060

Information

Type -
Description -
Location Contig388: 120298-126583
Sequence    

Annotation

kegg
ID pmum:103328592
description probable fructokinase-4
nr
ID AJK93565.1
description fructokinase [Manihot esculenta]
swissprot
ID Q9C524
description Probable fructokinase-6, chloroplastic OS=Arabidopsis thaliana GN=At1g66430 PE=2 SV=1
trembl
ID A0A0C5AZ85
description FRK1 protein OS=Manihot esculenta GN=FRK1 PE=2 SV=1
Gene Ontology
ID GO:0009570
description probable fructokinase-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38921: 120334-126597
cDNA
(Sanger)
(ID:Location)		 001_E18.ab1: 120366-124325 , 033_E05.ab1: 120334-124245

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000388_060 0.0 - - fructokinase [Manihot esculenta]
2 Hb_001789_200 0.0737747194 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
3 Hb_002053_010 0.0901154309 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
4 Hb_008147_080 0.093853008 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
5 Hb_000983_070 0.097571688 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001124_180 0.099715991 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
7 Hb_001898_180 0.1027548928 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
8 Hb_001711_120 0.1041776465 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
9 Hb_020378_060 0.1072519153 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_008375_010 0.1077264356 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
11 Hb_004644_030 0.1100730034 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
12 Hb_005218_080 0.1100869267 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002529_090 0.1114376157 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
14 Hb_007441_310 0.1119646995 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
15 Hb_000510_030 0.1134845743 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
16 Hb_000397_150 0.1148630864 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
17 Hb_004348_040 0.1153406899 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
18 Hb_000622_290 0.1162434583 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
19 Hb_005489_090 0.1169215786 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
20 Hb_002762_110 0.11708138 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000388_060 Hb_000388_060 Hb_001789_200 Hb_001789_200 Hb_000388_060--Hb_001789_200 Hb_002053_010 Hb_002053_010 Hb_000388_060--Hb_002053_010 Hb_008147_080 Hb_008147_080 Hb_000388_060--Hb_008147_080 Hb_000983_070 Hb_000983_070 Hb_000388_060--Hb_000983_070 Hb_001124_180 Hb_001124_180 Hb_000388_060--Hb_001124_180 Hb_001898_180 Hb_001898_180 Hb_000388_060--Hb_001898_180 Hb_001789_200--Hb_002053_010 Hb_001369_790 Hb_001369_790 Hb_001789_200--Hb_001369_790 Hb_016219_030 Hb_016219_030 Hb_001789_200--Hb_016219_030 Hb_004644_030 Hb_004644_030 Hb_001789_200--Hb_004644_030 Hb_007441_310 Hb_007441_310 Hb_001789_200--Hb_007441_310 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_002053_010--Hb_016219_030 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_008147_080--Hb_004644_030 Hb_005218_080 Hb_005218_080 Hb_008147_080--Hb_005218_080 Hb_008375_010 Hb_008375_010 Hb_008147_080--Hb_008375_010 Hb_001578_020 Hb_001578_020 Hb_008147_080--Hb_001578_020 Hb_000077_150 Hb_000077_150 Hb_008147_080--Hb_000077_150 Hb_000983_070--Hb_001898_180 Hb_010128_020 Hb_010128_020 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_001629_090 Hb_001629_090 Hb_000983_070--Hb_001629_090 Hb_000983_070--Hb_002053_010 Hb_005489_090 Hb_005489_090 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_000176_010 Hb_000176_010 Hb_001124_180--Hb_000176_010 Hb_001898_180--Hb_002053_010 Hb_020378_060 Hb_020378_060 Hb_001898_180--Hb_020378_060 Hb_000189_450 Hb_000189_450 Hb_001898_180--Hb_000189_450 Hb_007632_170 Hb_007632_170 Hb_001898_180--Hb_007632_170 Hb_000622_290 Hb_000622_290 Hb_001898_180--Hb_000622_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39617 7.57753 28.3677 28.3657 3.14872 4.81701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3545 19.2547 11.9124 18.1123 52.3848

CAGE analysis