Hb_000042_290

Information

Type -
Description -
Location Contig42: 241957-245857
Sequence    

Annotation

kegg
ID vvi:100247040
description uncharacterized LOC100247040
nr
ID XP_012070661.1
description PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KS37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00704 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41482: 244095-244207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_290 0.0 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
2 Hb_001124_180 0.0842240824 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
3 Hb_002150_130 0.0911524318 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
4 Hb_005489_090 0.1028295284 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
5 Hb_000152_480 0.1064272278 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
6 Hb_003935_080 0.1086521539 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
7 Hb_000176_010 0.1096475998 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
8 Hb_000032_140 0.1100380744 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001124_190 0.1124099654 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000473_050 0.1128832798 - - chromatin regulatory protein sir2, putative [Ricinus communis]
11 Hb_000175_050 0.1170314735 - - -
12 Hb_000922_340 0.1176529336 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
13 Hb_000110_230 0.1224466976 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
14 Hb_006620_070 0.1252493458 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
15 Hb_000594_100 0.1261663812 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
16 Hb_000627_300 0.1267078345 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
17 Hb_002759_120 0.1292114055 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005725_220 0.1324841513 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
19 Hb_006829_080 0.1337689219 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_002053_010 0.1344501432 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000042_290 Hb_000042_290 Hb_001124_180 Hb_001124_180 Hb_000042_290--Hb_001124_180 Hb_002150_130 Hb_002150_130 Hb_000042_290--Hb_002150_130 Hb_005489_090 Hb_005489_090 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_000042_290--Hb_003935_080 Hb_000176_010 Hb_000176_010 Hb_000042_290--Hb_000176_010 Hb_001124_180--Hb_005489_090 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_001124_180--Hb_000176_010 Hb_005914_050 Hb_005914_050 Hb_002150_130--Hb_005914_050 Hb_002150_130--Hb_000176_010 Hb_000627_300 Hb_000627_300 Hb_002150_130--Hb_000627_300 Hb_009178_070 Hb_009178_070 Hb_002150_130--Hb_009178_070 Hb_004117_040 Hb_004117_040 Hb_002150_130--Hb_004117_040 Hb_005489_090--Hb_003935_080 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_000175_050 Hb_000175_050 Hb_000152_480--Hb_000175_050 Hb_000152_480--Hb_005489_090 Hb_000112_060 Hb_000112_060 Hb_000152_480--Hb_000112_060 Hb_007426_170 Hb_007426_170 Hb_000152_480--Hb_007426_170 Hb_036790_120 Hb_036790_120 Hb_000152_480--Hb_036790_120 Hb_003935_080--Hb_000594_100 Hb_003935_080--Hb_010577_040 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050 Hb_009780_050 Hb_009780_050 Hb_000176_010--Hb_009780_050 Hb_000176_010--Hb_000627_300 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.374479 0.377616 4.65957 3.26327 0.552074 0.529237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.511 2.25252 1.14213 0.739606 7.59027

CAGE analysis