Hb_000866_050

Information

Type -
Description -
Location Contig866: 24746-34822
Sequence    

Annotation

kegg
ID rcu:RCOM_1615790
description Sialin, putative
nr
ID AJH76872.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q8GX78
description Ascorbate transporter, chloroplastic OS=Arabidopsis thaliana GN=PHT4;4 PE=1 SV=1
trembl
ID A0A0B5WYA8
description PT4;1 protein OS=Manihot esculenta GN=PT4;1 PE=2 SV=1
Gene Ontology
ID GO:0009941
description probable anion transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60926: 24793-34433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_050 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_000058_080 0.0932622027 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_000189_520 0.0935001879 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
4 Hb_003935_080 0.1047139863 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
5 Hb_011053_030 0.1056872645 - - -
6 Hb_183963_010 0.1072797727 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
7 Hb_000107_590 0.1124932928 - - PREDICTED: tricalbin-3 [Jatropha curcas]
8 Hb_026314_030 0.1138629998 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
9 Hb_001792_030 0.1149137147 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
10 Hb_000352_220 0.1234710639 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_011053_020 0.1259154777 - - lipoic acid synthetase, putative [Ricinus communis]
12 Hb_000114_150 0.1286419001 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_000834_080 0.1290894285 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
14 Hb_000495_080 0.1335744747 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
15 Hb_010577_040 0.1354288877 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
16 Hb_000023_210 0.1360447776 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
17 Hb_001621_060 0.1362456186 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
18 Hb_003124_120 0.1365724315 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
19 Hb_000594_100 0.1374808192 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
20 Hb_001628_120 0.1379116274 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]

Gene co-expression network

sample Hb_000866_050 Hb_000866_050 Hb_000058_080 Hb_000058_080 Hb_000866_050--Hb_000058_080 Hb_000189_520 Hb_000189_520 Hb_000866_050--Hb_000189_520 Hb_003935_080 Hb_003935_080 Hb_000866_050--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000866_050--Hb_011053_030 Hb_183963_010 Hb_183963_010 Hb_000866_050--Hb_183963_010 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590 Hb_001792_030 Hb_001792_030 Hb_000058_080--Hb_001792_030 Hb_158144_020 Hb_158144_020 Hb_000058_080--Hb_158144_020 Hb_003581_290 Hb_003581_290 Hb_000058_080--Hb_003581_290 Hb_000594_100 Hb_000594_100 Hb_000058_080--Hb_000594_100 Hb_003124_120 Hb_003124_120 Hb_000058_080--Hb_003124_120 Hb_000189_520--Hb_001792_030 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_001621_060 Hb_001621_060 Hb_000189_520--Hb_001621_060 Hb_000189_520--Hb_003935_080 Hb_000189_520--Hb_011053_030 Hb_005489_090 Hb_005489_090 Hb_003935_080--Hb_005489_090 Hb_003935_080--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_003935_080--Hb_010577_040 Hb_001124_180 Hb_001124_180 Hb_003935_080--Hb_001124_180 Hb_003935_080--Hb_001792_030 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_000175_050 Hb_000175_050 Hb_011053_030--Hb_000175_050 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_011053_020 Hb_011053_020 Hb_183963_010--Hb_011053_020 Hb_005228_040 Hb_005228_040 Hb_183963_010--Hb_005228_040 Hb_183963_010--Hb_026314_030 Hb_183963_010--Hb_011053_030 Hb_000023_210 Hb_000023_210 Hb_183963_010--Hb_000023_210 Hb_000114_150 Hb_000114_150 Hb_000107_590--Hb_000114_150 Hb_000816_200 Hb_000816_200 Hb_000107_590--Hb_000816_200 Hb_001628_120 Hb_001628_120 Hb_000107_590--Hb_001628_120 Hb_007441_310 Hb_007441_310 Hb_000107_590--Hb_007441_310 Hb_002305_010 Hb_002305_010 Hb_000107_590--Hb_002305_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04105 5.58776 23.9146 26.4128 2.44875 4.25104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.76033 10.5245 16.5088 13.8078 76.5656

CAGE analysis