Hb_183963_010

Information

Type -
Description -
Location Contig183963: 12808-16948
Sequence    

Annotation

kegg
ID pop:POPTR_0014s18500g
description POPTRDRAFT_573397; core region of GTP cyclohydrolase I family protein
nr
ID XP_002320619.1
description core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
swissprot
ID Q8VYU3
description GTP cyclohydrolase 1 OS=Solanum lycopersicum GN=GCH1 PE=1 SV=1
trembl
ID B9IBE3
description Core region of GTP cyclohydrolase I family protein OS=Populus trichocarpa GN=POPTR_0014s18500g PE=4 SV=1
Gene Ontology
ID GO:0005737
description gtp cyclohydrolase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17964: 13130-16971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183963_010 0.0 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
2 Hb_011053_020 0.0949852709 - - lipoic acid synthetase, putative [Ricinus communis]
3 Hb_005228_040 0.1071002127 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
4 Hb_000866_050 0.1072797727 - - phosphate transporter [Manihot esculenta]
5 Hb_026314_030 0.1236718714 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
6 Hb_011053_030 0.1239449478 - - -
7 Hb_000023_210 0.13652539 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
8 Hb_000834_080 0.1401847339 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
9 Hb_009252_010 0.141060021 - - PREDICTED: kinesin light chain [Jatropha curcas]
10 Hb_000984_210 0.1484583257 - - PREDICTED: uncharacterized protein LOC104451821 [Eucalyptus grandis]
11 Hb_031330_020 0.1518333021 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
12 Hb_003941_030 0.1524543228 - - Protease ecfE, putative [Ricinus communis]
13 Hb_000189_520 0.1530842133 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
14 Hb_000495_080 0.1556037853 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
15 Hb_002894_090 0.1569293044 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
16 Hb_000012_010 0.1589304907 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
17 Hb_007002_010 0.1591896698 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
18 Hb_000032_400 0.1595766801 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
19 Hb_000684_280 0.159627868 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
20 Hb_001628_120 0.1596501292 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]

Gene co-expression network

sample Hb_183963_010 Hb_183963_010 Hb_011053_020 Hb_011053_020 Hb_183963_010--Hb_011053_020 Hb_005228_040 Hb_005228_040 Hb_183963_010--Hb_005228_040 Hb_000866_050 Hb_000866_050 Hb_183963_010--Hb_000866_050 Hb_026314_030 Hb_026314_030 Hb_183963_010--Hb_026314_030 Hb_011053_030 Hb_011053_030 Hb_183963_010--Hb_011053_030 Hb_000023_210 Hb_000023_210 Hb_183963_010--Hb_000023_210 Hb_007002_010 Hb_007002_010 Hb_011053_020--Hb_007002_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_011053_020--Hb_000023_210 Hb_011053_020--Hb_000866_050 Hb_000189_520 Hb_000189_520 Hb_011053_020--Hb_000189_520 Hb_009252_010 Hb_009252_010 Hb_005228_040--Hb_009252_010 Hb_001628_120 Hb_001628_120 Hb_005228_040--Hb_001628_120 Hb_000984_210 Hb_000984_210 Hb_005228_040--Hb_000984_210 Hb_003226_250 Hb_003226_250 Hb_005228_040--Hb_003226_250 Hb_000834_080 Hb_000834_080 Hb_005228_040--Hb_000834_080 Hb_000058_080 Hb_000058_080 Hb_000866_050--Hb_000058_080 Hb_000866_050--Hb_000189_520 Hb_003935_080 Hb_003935_080 Hb_000866_050--Hb_003935_080 Hb_000866_050--Hb_011053_030 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590 Hb_026314_030--Hb_011053_030 Hb_026314_030--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_026314_030--Hb_000032_400 Hb_026314_030--Hb_000834_080 Hb_005305_020 Hb_005305_020 Hb_026314_030--Hb_005305_020 Hb_011053_030--Hb_000834_080 Hb_000175_050 Hb_000175_050 Hb_011053_030--Hb_000175_050 Hb_011053_030--Hb_000032_400 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_000402_170 Hb_000402_170 Hb_000023_210--Hb_000402_170 Hb_002304_180 Hb_002304_180 Hb_000023_210--Hb_002304_180 Hb_000300_020 Hb_000300_020 Hb_000023_210--Hb_000300_020 Hb_000023_210--Hb_007002_010 Hb_000684_280 Hb_000684_280 Hb_000023_210--Hb_000684_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68629 3.76047 9.3454 18.1721 1.32752 2.19817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.95354 4.89813 10.1342 3.59177 41.6631

CAGE analysis