Hb_000834_080

Information

Type -
Description -
Location Contig834: 65015-67973
Sequence    

Annotation

kegg
ID rcu:RCOM_1052730
description hypothetical protein
nr
ID XP_012076688.1
description PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07245 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59872: 65388-67620 , PASA_asmbl_59873: 67961-68390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_080 0.0 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
2 Hb_011053_030 0.0706289444 - - -
3 Hb_126917_010 0.0890080163 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
4 Hb_001628_120 0.1064273803 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
5 Hb_012799_190 0.1072589311 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
6 Hb_000975_050 0.1111375687 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
7 Hb_000175_050 0.1159172366 - - -
8 Hb_026314_030 0.1187899082 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
9 Hb_032631_070 0.1188905528 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
10 Hb_000300_020 0.1197709721 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
11 Hb_001269_500 0.1212015935 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
12 Hb_004672_020 0.1227900247 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
13 Hb_000805_010 0.1243837128 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
14 Hb_004242_170 0.1254775748 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
15 Hb_009687_020 0.1258130819 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
16 Hb_008616_040 0.1260756056 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
17 Hb_002817_040 0.1262952747 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
18 Hb_005228_040 0.126986791 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
19 Hb_000441_050 0.128858277 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
20 Hb_000866_050 0.1290894285 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_000834_080 Hb_000834_080 Hb_011053_030 Hb_011053_030 Hb_000834_080--Hb_011053_030 Hb_126917_010 Hb_126917_010 Hb_000834_080--Hb_126917_010 Hb_001628_120 Hb_001628_120 Hb_000834_080--Hb_001628_120 Hb_012799_190 Hb_012799_190 Hb_000834_080--Hb_012799_190 Hb_000975_050 Hb_000975_050 Hb_000834_080--Hb_000975_050 Hb_000175_050 Hb_000175_050 Hb_000834_080--Hb_000175_050 Hb_011053_030--Hb_000175_050 Hb_000032_400 Hb_000032_400 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_011053_030--Hb_126917_010 Hb_009687_020 Hb_009687_020 Hb_126917_010--Hb_009687_020 Hb_000300_020 Hb_000300_020 Hb_126917_010--Hb_000300_020 Hb_003171_030 Hb_003171_030 Hb_126917_010--Hb_003171_030 Hb_001269_500 Hb_001269_500 Hb_126917_010--Hb_001269_500 Hb_001976_030 Hb_001976_030 Hb_001628_120--Hb_001976_030 Hb_000684_390 Hb_000684_390 Hb_001628_120--Hb_000684_390 Hb_042083_040 Hb_042083_040 Hb_001628_120--Hb_042083_040 Hb_000049_180 Hb_000049_180 Hb_001628_120--Hb_000049_180 Hb_007441_310 Hb_007441_310 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150 Hb_004242_170 Hb_004242_170 Hb_012799_190--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_012799_190--Hb_001053_020 Hb_000336_200 Hb_000336_200 Hb_012799_190--Hb_000336_200 Hb_000976_130 Hb_000976_130 Hb_012799_190--Hb_000976_130 Hb_000762_110 Hb_000762_110 Hb_012799_190--Hb_000762_110 Hb_000966_040 Hb_000966_040 Hb_000975_050--Hb_000966_040 Hb_010098_040 Hb_010098_040 Hb_000975_050--Hb_010098_040 Hb_000441_050 Hb_000441_050 Hb_000975_050--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_000975_050--Hb_005181_120 Hb_005977_060 Hb_005977_060 Hb_000975_050--Hb_005977_060 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60946 4.77314 11.5832 14.5162 2.24442 1.63906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87264 4.56409 3.103 4.33876 31.7983

CAGE analysis