Hb_005181_120

Information

Type -
Description -
Location Contig5181: 57695-62323
Sequence    

Annotation

kegg
ID rcu:RCOM_1000510
description pre-mRNA splicing factor, putative
nr
ID XP_012084080.1
description PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9FNS4
description PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1
trembl
ID A0A067K7X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18999 PE=4 SV=1
Gene Ontology
ID GO:0005774
description psbb mrna maturation factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46571: 57673-62305
cDNA
(Sanger)
(ID:Location)		 011_A20.ab1: 57680-59830

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_120 0.0 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_010098_040 0.0580119373 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
3 Hb_000516_080 0.0643060227 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
4 Hb_000679_080 0.0650679655 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
5 Hb_002811_250 0.0737902328 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
6 Hb_007982_040 0.0775043664 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
7 Hb_000108_150 0.0860196145 - - alpha/beta hydrolase, putative [Ricinus communis]
8 Hb_000045_050 0.0866942773 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
9 Hb_000684_200 0.0948981678 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_000264_280 0.0979642706 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
11 Hb_002374_450 0.1013526264 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
12 Hb_071079_020 0.1018363198 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_000834_060 0.1024852868 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000193_220 0.1026201696 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
15 Hb_000803_170 0.1034699229 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
16 Hb_000061_250 0.1055890906 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
17 Hb_000099_170 0.1064983003 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
18 Hb_010721_020 0.1067352407 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
19 Hb_000005_100 0.1082385778 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
20 Hb_005977_060 0.1085300326 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005181_120 Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_005181_120--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_005181_120--Hb_000516_080 Hb_000679_080 Hb_000679_080 Hb_005181_120--Hb_000679_080 Hb_002811_250 Hb_002811_250 Hb_005181_120--Hb_002811_250 Hb_007982_040 Hb_007982_040 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_010098_040--Hb_002811_250 Hb_010098_040--Hb_000516_080 Hb_010098_040--Hb_007982_040 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_000516_080--Hb_007982_040 Hb_000516_080--Hb_000679_080 Hb_002374_450 Hb_002374_450 Hb_000516_080--Hb_002374_450 Hb_000516_080--Hb_002811_250 Hb_000679_080--Hb_002811_250 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000679_080--Hb_007982_040 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_010557_010 Hb_010557_010 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_010721_020 Hb_010721_020 Hb_007982_040--Hb_010721_020 Hb_009692_040 Hb_009692_040 Hb_007982_040--Hb_009692_040 Hb_007982_040--Hb_000193_220 Hb_000061_250 Hb_000061_250 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.58888 13.2742 49.6683 30.4248 2.96446 4.75226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24889 3.8409 5.79718 7.97213 79.7923

CAGE analysis