Hb_071079_020

Information

Type -
Description -
Location Contig71079: 24868-29307
Sequence    

Annotation

kegg
ID rcu:RCOM_1580440
description RNA polymerase sigma factor rpoD, putative
nr
ID XP_002513587.1
description RNA polymerase sigma factor rpoD, putative [Ricinus communis]
swissprot
ID Q9ZNX9
description RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SIGE PE=1 SV=1
trembl
ID B9RIL8
description RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_1580440 PE=4 SV=1
Gene Ontology
ID GO:0003677
description rna polymerase sigma factor chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55278: 24971-29244 , PASA_asmbl_55279: 27447-27924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071079_020 0.0 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
2 Hb_000108_150 0.073683818 - - alpha/beta hydrolase, putative [Ricinus communis]
3 Hb_000045_050 0.0889933615 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
4 Hb_000099_170 0.0922410808 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
5 Hb_000061_250 0.0996896494 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
6 Hb_004242_170 0.0999489287 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
7 Hb_005181_120 0.1018363198 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_010721_020 0.1075789438 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
9 Hb_007982_040 0.1087388892 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
10 Hb_000032_390 0.1096590083 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
11 Hb_000118_090 0.1120626328 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_001053_020 0.1143091651 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
13 Hb_000679_080 0.1172779936 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
14 Hb_011649_010 0.1193414791 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
15 Hb_002811_050 0.1204517232 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
16 Hb_001269_500 0.1212208109 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
17 Hb_004055_160 0.1215528461 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
18 Hb_012799_190 0.1219556298 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
19 Hb_000264_280 0.122798102 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
20 Hb_000441_050 0.1242060398 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]

Gene co-expression network

sample Hb_071079_020 Hb_071079_020 Hb_000108_150 Hb_000108_150 Hb_071079_020--Hb_000108_150 Hb_000045_050 Hb_000045_050 Hb_071079_020--Hb_000045_050 Hb_000099_170 Hb_000099_170 Hb_071079_020--Hb_000099_170 Hb_000061_250 Hb_000061_250 Hb_071079_020--Hb_000061_250 Hb_004242_170 Hb_004242_170 Hb_071079_020--Hb_004242_170 Hb_005181_120 Hb_005181_120 Hb_071079_020--Hb_005181_120 Hb_000108_150--Hb_000061_250 Hb_000108_150--Hb_000045_050 Hb_000108_150--Hb_005181_120 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_000045_050--Hb_000061_250 Hb_000544_080 Hb_000544_080 Hb_000045_050--Hb_000544_080 Hb_003948_020 Hb_003948_020 Hb_000045_050--Hb_003948_020 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_000045_050--Hb_005181_120 Hb_000099_170--Hb_000108_150 Hb_002675_080 Hb_002675_080 Hb_000099_170--Hb_002675_080 Hb_000322_030 Hb_000322_030 Hb_000099_170--Hb_000322_030 Hb_000099_170--Hb_005181_120 Hb_000099_170--Hb_000061_250 Hb_000061_250--Hb_000544_080 Hb_000061_250--Hb_000264_280 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_000441_050 Hb_000441_050 Hb_004242_170--Hb_000441_050 Hb_001053_020 Hb_001053_020 Hb_004242_170--Hb_001053_020 Hb_004242_170--Hb_000108_150 Hb_005977_060 Hb_005977_060 Hb_004242_170--Hb_005977_060 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_009692_040 Hb_009692_040 Hb_004242_170--Hb_009692_040 Hb_010098_040 Hb_010098_040 Hb_005181_120--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_005181_120--Hb_000516_080 Hb_000679_080 Hb_000679_080 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_002811_250 Hb_007982_040 Hb_007982_040 Hb_005181_120--Hb_007982_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41739 17.0563 67.5219 56.2699 14.6546 9.06136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66692 6.48729 6.73376 7.40094 119.3

CAGE analysis