Hb_000099_170

Information

Type -
Description -
Location Contig99: 209796-212788
Sequence    

Annotation

kegg
ID rcu:RCOM_1689430
description prenyl-dependent CAAX protease, putative
nr
ID XP_012086802.1
description PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20517 PE=4 SV=1
Gene Ontology
ID GO:0016020
description prenyl-dependent caax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64744: 209806-212828 , PASA_asmbl_64745: 211269-211479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_170 0.0 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
2 Hb_071079_020 0.0922410808 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
3 Hb_000108_150 0.0939306824 - - alpha/beta hydrolase, putative [Ricinus communis]
4 Hb_002675_080 0.0951046632 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
5 Hb_000322_030 0.0972191887 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
6 Hb_005181_120 0.1064983003 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000061_250 0.1104053498 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
8 Hb_002811_050 0.1110111925 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
9 Hb_000042_050 0.113131002 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
10 Hb_002374_450 0.1142355229 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
11 Hb_000264_280 0.1146860003 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
12 Hb_001021_210 0.1147038842 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_000140_060 0.116979146 - - 50S ribosomal protein L5, putative [Ricinus communis]
14 Hb_002542_060 0.1177888264 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
15 Hb_008179_030 0.1184114114 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
16 Hb_003664_030 0.1185019239 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
17 Hb_000357_070 0.1205662466 - - -
18 Hb_000679_080 0.1225324117 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
19 Hb_000388_080 0.1226294565 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
20 Hb_034579_020 0.1233798328 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000099_170 Hb_000099_170 Hb_071079_020 Hb_071079_020 Hb_000099_170--Hb_071079_020 Hb_000108_150 Hb_000108_150 Hb_000099_170--Hb_000108_150 Hb_002675_080 Hb_002675_080 Hb_000099_170--Hb_002675_080 Hb_000322_030 Hb_000322_030 Hb_000099_170--Hb_000322_030 Hb_005181_120 Hb_005181_120 Hb_000099_170--Hb_005181_120 Hb_000061_250 Hb_000061_250 Hb_000099_170--Hb_000061_250 Hb_071079_020--Hb_000108_150 Hb_000045_050 Hb_000045_050 Hb_071079_020--Hb_000045_050 Hb_071079_020--Hb_000061_250 Hb_004242_170 Hb_004242_170 Hb_071079_020--Hb_004242_170 Hb_071079_020--Hb_005181_120 Hb_000108_150--Hb_000061_250 Hb_000108_150--Hb_000045_050 Hb_000108_150--Hb_005181_120 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_000042_050 Hb_000042_050 Hb_002675_080--Hb_000042_050 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_002026_030 Hb_002026_030 Hb_002675_080--Hb_002026_030 Hb_000181_330 Hb_000181_330 Hb_000322_030--Hb_000181_330 Hb_000390_210 Hb_000390_210 Hb_000322_030--Hb_000390_210 Hb_000388_080 Hb_000388_080 Hb_000322_030--Hb_000388_080 Hb_000958_120 Hb_000958_120 Hb_000322_030--Hb_000958_120 Hb_000227_400 Hb_000227_400 Hb_000322_030--Hb_000227_400 Hb_010098_040 Hb_010098_040 Hb_005181_120--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_005181_120--Hb_000516_080 Hb_000679_080 Hb_000679_080 Hb_005181_120--Hb_000679_080 Hb_002811_250 Hb_002811_250 Hb_005181_120--Hb_002811_250 Hb_007982_040 Hb_007982_040 Hb_005181_120--Hb_007982_040 Hb_000061_250--Hb_000045_050 Hb_000544_080 Hb_000544_080 Hb_000061_250--Hb_000544_080 Hb_000061_250--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_000061_250--Hb_003948_020 Hb_000061_250--Hb_000390_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.32317 7.77626 22.048 19.5977 2.64462 2.15073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85207 2.3786 2.2238 2.49383 29.4109

CAGE analysis