Hb_000227_400

Information

Type -
Description -
Location Contig227: 367779-371864
Sequence    

Annotation

kegg
ID rcu:RCOM_0677750
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_002516771.1
description lipoxygenase, putative [Ricinus communis]
swissprot
ID Q43191
description Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1
trembl
ID B9RSQ2
description Lipoxygenase OS=Ricinus communis GN=RCOM_0677750 PE=3 SV=1
Gene Ontology
ID GO:0016702
description probable linoleate 9s-lipoxygenase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23654: 367744-371816 , PASA_asmbl_23655: 369591-370216 , PASA_asmbl_23656: 367744-370713 , PASA_asmbl_23657: 370785-371020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_400 0.0 - - lipoxygenase, putative [Ricinus communis]
2 Hb_001922_110 0.0660183394 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010868_040 0.0795070941 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
4 Hb_004855_020 0.0930799273 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
5 Hb_000207_350 0.1017053252 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
6 Hb_000958_120 0.1026746278 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
7 Hb_000243_060 0.1039609248 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
8 Hb_008511_040 0.1076877951 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_006133_020 0.1109506783 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
10 Hb_000076_250 0.1116915151 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000322_030 0.1154189263 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
12 Hb_002701_070 0.115590215 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
13 Hb_001141_050 0.1178585602 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
14 Hb_000940_030 0.1181932045 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
15 Hb_000792_050 0.1192022539 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000181_330 0.1206821373 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
17 Hb_001775_120 0.1215915889 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
18 Hb_010381_040 0.1266734823 - - beta-galactosidase, putative [Ricinus communis]
19 Hb_034579_020 0.1269647134 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003055_070 0.1276827324 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_400 Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_000227_400--Hb_001922_110 Hb_010868_040 Hb_010868_040 Hb_000227_400--Hb_010868_040 Hb_004855_020 Hb_004855_020 Hb_000227_400--Hb_004855_020 Hb_000207_350 Hb_000207_350 Hb_000227_400--Hb_000207_350 Hb_000958_120 Hb_000958_120 Hb_000227_400--Hb_000958_120 Hb_000243_060 Hb_000243_060 Hb_000227_400--Hb_000243_060 Hb_001141_050 Hb_001141_050 Hb_001922_110--Hb_001141_050 Hb_001922_110--Hb_000958_120 Hb_000792_050 Hb_000792_050 Hb_001922_110--Hb_000792_050 Hb_001922_110--Hb_010868_040 Hb_008511_040 Hb_008511_040 Hb_001922_110--Hb_008511_040 Hb_010868_040--Hb_004855_020 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_010868_040--Hb_000207_350 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040 Hb_004855_020--Hb_000207_350 Hb_004855_020--Hb_010381_040 Hb_001104_150 Hb_001104_150 Hb_004855_020--Hb_001104_150 Hb_001123_310 Hb_001123_310 Hb_004855_020--Hb_001123_310 Hb_000207_350--Hb_001104_150 Hb_000207_350--Hb_001123_310 Hb_000207_350--Hb_010381_040 Hb_005568_020 Hb_005568_020 Hb_000207_350--Hb_005568_020 Hb_002701_070 Hb_002701_070 Hb_000958_120--Hb_002701_070 Hb_000322_030 Hb_000322_030 Hb_000958_120--Hb_000322_030 Hb_000390_210 Hb_000390_210 Hb_000958_120--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000958_120--Hb_001544_050 Hb_000181_330 Hb_000181_330 Hb_000243_060--Hb_000181_330 Hb_002078_390 Hb_002078_390 Hb_000243_060--Hb_002078_390 Hb_000243_060--Hb_010381_040 Hb_000926_040 Hb_000926_040 Hb_000243_060--Hb_000926_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48485 3.90151 17.2151 9.80575 0.509733 0.757658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.742634 0.584389 0.348975 2.47327 9.88555

CAGE analysis