Hb_004855_020

Information

Type -
Description -
Location Contig4855: 17361-19995
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10010g
description POPTRDRAFT_819208; hypothetical protein
nr
ID XP_002308216.2
description hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
swissprot
ID Q6ZY51
description Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1
trembl
ID B9HCL9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10010g PE=4 SV=2
Gene Ontology
ID GO:0008152
description carbohydrate-binding-like isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44972: 18301-20095 , PASA_asmbl_44973: 17382-18588 , PASA_asmbl_44975: 20956-21508
cDNA
(Sanger)
(ID:Location)		 024_I08.ab1: 19000-20095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004855_020 0.0 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
2 Hb_010868_040 0.0697773983 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
3 Hb_000207_350 0.075026316 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
4 Hb_000227_400 0.0930799273 - - lipoxygenase, putative [Ricinus communis]
5 Hb_010381_040 0.0958271447 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_001104_150 0.1109704368 - - PREDICTED: protein ROS1 [Jatropha curcas]
7 Hb_001123_310 0.1128459192 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
8 Hb_001775_120 0.1149184688 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
9 Hb_000008_200 0.1162154096 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
10 Hb_001922_110 0.117060978 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000243_060 0.1186122361 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
12 Hb_000120_300 0.1230290696 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
13 Hb_003050_360 0.1235591826 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
14 Hb_000926_040 0.1241365852 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
15 Hb_001377_530 0.1275081181 - - NC domain-containing family protein [Populus trichocarpa]
16 Hb_005568_020 0.1283363861 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
17 Hb_002085_090 0.1285312447 - - -
18 Hb_000996_080 0.1286065932 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
19 Hb_002701_070 0.1288702202 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
20 Hb_000940_030 0.1294308972 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004855_020 Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_004855_020--Hb_010868_040 Hb_000207_350 Hb_000207_350 Hb_004855_020--Hb_000207_350 Hb_000227_400 Hb_000227_400 Hb_004855_020--Hb_000227_400 Hb_010381_040 Hb_010381_040 Hb_004855_020--Hb_010381_040 Hb_001104_150 Hb_001104_150 Hb_004855_020--Hb_001104_150 Hb_001123_310 Hb_001123_310 Hb_004855_020--Hb_001123_310 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010868_040--Hb_010381_040 Hb_000207_350--Hb_001104_150 Hb_000207_350--Hb_001123_310 Hb_000207_350--Hb_010381_040 Hb_005568_020 Hb_005568_020 Hb_000207_350--Hb_005568_020 Hb_001922_110 Hb_001922_110 Hb_000227_400--Hb_001922_110 Hb_000227_400--Hb_000207_350 Hb_000958_120 Hb_000958_120 Hb_000227_400--Hb_000958_120 Hb_000227_400--Hb_000243_060 Hb_010381_040--Hb_000243_060 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_001775_120 Hb_001775_120 Hb_001104_150--Hb_001775_120 Hb_001104_150--Hb_005568_020 Hb_005730_110 Hb_005730_110 Hb_001104_150--Hb_005730_110 Hb_022092_110 Hb_022092_110 Hb_001104_150--Hb_022092_110 Hb_004218_200 Hb_004218_200 Hb_001104_150--Hb_004218_200 Hb_000120_300 Hb_000120_300 Hb_001123_310--Hb_000120_300 Hb_000483_080 Hb_000483_080 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56578 9.14692 35.3037 26.5273 0.651386 1.38077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92028 1.82073 0.940335 10.5665 22.4063

CAGE analysis