Hb_022092_110

Information

Type -
Description -
Location Contig22092: 57658-62048
Sequence    

Annotation

kegg
ID rcu:RCOM_1175970
description protein phosphatase-2c, putative (EC:3.1.3.16)
nr
ID XP_012088330.1
description PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
swissprot
ID Q8GY60
description Probable protein phosphatase 2C 52 OS=Arabidopsis thaliana GN=At4g03415 PE=2 SV=1
trembl
ID A0A067JJU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25824 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 52

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22761: 57651-61860 , PASA_asmbl_22762: 57651-63579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022092_110 0.0 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
2 Hb_001936_180 0.071812778 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
3 Hb_001946_200 0.0811555307 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
4 Hb_001440_010 0.0886048075 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
5 Hb_000735_060 0.0894293055 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
6 Hb_000418_170 0.0895116241 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
7 Hb_002311_280 0.0899108119 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_005730_110 0.0919078382 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
9 Hb_003266_090 0.0932731894 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
10 Hb_005568_020 0.0981511648 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
11 Hb_001054_040 0.0985181711 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
12 Hb_031385_010 0.1034942217 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
13 Hb_000834_220 0.1043943701 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
14 Hb_001104_150 0.1063615223 - - PREDICTED: protein ROS1 [Jatropha curcas]
15 Hb_026240_020 0.1067402491 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
16 Hb_044653_050 0.1112505449 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
17 Hb_001019_160 0.1120359051 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000932_060 0.1121123893 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003454_050 0.1122752684 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
20 Hb_028008_040 0.1124094803 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_022092_110 Hb_022092_110 Hb_001936_180 Hb_001936_180 Hb_022092_110--Hb_001936_180 Hb_001946_200 Hb_001946_200 Hb_022092_110--Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_022092_110--Hb_001440_010 Hb_000735_060 Hb_000735_060 Hb_022092_110--Hb_000735_060 Hb_000418_170 Hb_000418_170 Hb_022092_110--Hb_000418_170 Hb_002311_280 Hb_002311_280 Hb_022092_110--Hb_002311_280 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_001936_180--Hb_001440_010 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_001936_180--Hb_000418_170 Hb_001946_200--Hb_001440_010 Hb_009113_080 Hb_009113_080 Hb_001946_200--Hb_009113_080 Hb_026240_020 Hb_026240_020 Hb_001946_200--Hb_026240_020 Hb_032920_030 Hb_032920_030 Hb_001946_200--Hb_032920_030 Hb_000834_220 Hb_000834_220 Hb_001440_010--Hb_000834_220 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_003656_090 Hb_003656_090 Hb_001440_010--Hb_003656_090 Hb_005568_020 Hb_005568_020 Hb_000735_060--Hb_005568_020 Hb_003606_050 Hb_003606_050 Hb_000735_060--Hb_003606_050 Hb_000735_060--Hb_001936_180 Hb_000735_060--Hb_000418_170 Hb_000008_200 Hb_000008_200 Hb_000735_060--Hb_000008_200 Hb_000627_040 Hb_000627_040 Hb_000418_170--Hb_000627_040 Hb_005730_110 Hb_005730_110 Hb_000418_170--Hb_005730_110 Hb_005675_050 Hb_005675_050 Hb_000418_170--Hb_005675_050 Hb_021065_010 Hb_021065_010 Hb_000418_170--Hb_021065_010 Hb_007130_020 Hb_007130_020 Hb_002311_280--Hb_007130_020 Hb_003266_090 Hb_003266_090 Hb_002311_280--Hb_003266_090 Hb_033006_020 Hb_033006_020 Hb_002311_280--Hb_033006_020 Hb_044653_050 Hb_044653_050 Hb_002311_280--Hb_044653_050 Hb_000181_330 Hb_000181_330 Hb_002311_280--Hb_000181_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286683 9.50065 24.5843 25.2116 0.243711 0.491532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.400797 0.330393 0.371616 7.36311 14.4366

CAGE analysis