Hb_032920_030

Information

Type -
Description -
Location Contig32920: 10485-12696
Sequence    

Annotation

kegg
ID rcu:RCOM_0174860
description signal transducer, putative
nr
ID XP_002527501.1
description signal transducer, putative [Ricinus communis]
swissprot
ID O80970
description BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1
trembl
ID B9SND2
description Signal transducer, putative OS=Ricinus communis GN=RCOM_0174860 PE=4 SV=1
Gene Ontology
ID GO:0071944
description btb poz domain-containing protein npy2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34617: 10901-11493 , PASA_asmbl_34621: 13150-14617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032920_030 0.0 - - signal transducer, putative [Ricinus communis]
2 Hb_000645_160 0.081060763 - - protein translocase, putative [Ricinus communis]
3 Hb_001946_200 0.0947219047 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
4 Hb_001440_010 0.1009263165 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
5 Hb_000742_130 0.1062691157 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
6 Hb_000098_260 0.1135181768 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_001936_180 0.1148372403 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
8 Hb_022092_110 0.1193253183 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
9 Hb_000365_430 0.1222292233 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
10 Hb_149055_010 0.1226646329 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
11 Hb_003092_020 0.1253371625 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
12 Hb_007290_050 0.1258285712 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
13 Hb_007479_080 0.1266413224 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
14 Hb_009189_100 0.1273031339 - - PREDICTED: patellin-6 [Jatropha curcas]
15 Hb_001269_400 0.1276605825 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
16 Hb_026240_020 0.1284952769 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
17 Hb_001019_160 0.1322505729 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001138_070 0.1327235275 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
19 Hb_012539_100 0.133753338 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
20 Hb_005357_120 0.1361516184 transcription factor TF Family: MYB-related -

Gene co-expression network

sample Hb_032920_030 Hb_032920_030 Hb_000645_160 Hb_000645_160 Hb_032920_030--Hb_000645_160 Hb_001946_200 Hb_001946_200 Hb_032920_030--Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_032920_030--Hb_001440_010 Hb_000742_130 Hb_000742_130 Hb_032920_030--Hb_000742_130 Hb_000098_260 Hb_000098_260 Hb_032920_030--Hb_000098_260 Hb_001936_180 Hb_001936_180 Hb_032920_030--Hb_001936_180 Hb_000645_160--Hb_000742_130 Hb_000645_160--Hb_001936_180 Hb_000645_160--Hb_000098_260 Hb_001138_070 Hb_001138_070 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010 Hb_001946_200--Hb_001440_010 Hb_022092_110 Hb_022092_110 Hb_001946_200--Hb_022092_110 Hb_001946_200--Hb_001936_180 Hb_009113_080 Hb_009113_080 Hb_001946_200--Hb_009113_080 Hb_026240_020 Hb_026240_020 Hb_001946_200--Hb_026240_020 Hb_000834_220 Hb_000834_220 Hb_001440_010--Hb_000834_220 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_003656_090 Hb_003656_090 Hb_001440_010--Hb_003656_090 Hb_001440_010--Hb_001936_180 Hb_001440_010--Hb_022092_110 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000742_130--Hb_000098_260 Hb_006120_210 Hb_006120_210 Hb_000742_130--Hb_006120_210 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_000098_260--Hb_092975_010 Hb_002641_140 Hb_002641_140 Hb_000098_260--Hb_002641_140 Hb_000365_430 Hb_000365_430 Hb_000098_260--Hb_000365_430 Hb_000411_020 Hb_000411_020 Hb_000098_260--Hb_000411_020 Hb_001936_180--Hb_022092_110 Hb_001936_180--Hb_000365_430 Hb_000418_170 Hb_000418_170 Hb_001936_180--Hb_000418_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.188231 0.399958 0.61068 0.0104494 0.0108761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0199722 0 0.190905 0.252415

CAGE analysis