Hb_149055_010

Information

Type -
Description -
Location Contig149055: 2-586
Sequence    

Annotation

kegg
ID rcu:RCOM_1164350
description cinnamate 4-hydroxylase, putative (EC:1.14.13.11)
nr
ID AEM63594.1
description cinnamate 4-hydroxylase [Leucaena leucocephala]
swissprot
ID O24312
description Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1
trembl
ID G3D5B5
description Cinnamate 4-hydroxylase OS=Leucaena leucocephala GN=C4H PE=2 SV=1
Gene Ontology
ID GO:0005506
description trans-cinnamate 4-hydroxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12398: 26-763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149055_010 0.0 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
2 Hb_001269_400 0.0701125315 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
3 Hb_001138_070 0.0764219846 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
4 Hb_000329_010 0.0839868521 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
5 Hb_002809_080 0.0932641781 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000645_160 0.0967966979 - - protein translocase, putative [Ricinus communis]
7 Hb_000120_320 0.0981717506 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_009189_100 0.0986399847 - - PREDICTED: patellin-6 [Jatropha curcas]
9 Hb_002641_140 0.101250686 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_007237_080 0.1013631553 - - amino acid transporter, putative [Ricinus communis]
11 Hb_002171_020 0.1041426961 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
12 Hb_000098_260 0.1041739405 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_001677_090 0.1056552284 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
14 Hb_031224_010 0.107124362 - - -
15 Hb_178049_010 0.1120358436 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
16 Hb_002370_050 0.1127492766 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
17 Hb_092975_010 0.1147586118 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
18 Hb_002518_020 0.1184117523 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
19 Hb_002151_020 0.1192614185 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
20 Hb_007290_050 0.1192813048 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_149055_010 Hb_149055_010 Hb_001269_400 Hb_001269_400 Hb_149055_010--Hb_001269_400 Hb_001138_070 Hb_001138_070 Hb_149055_010--Hb_001138_070 Hb_000329_010 Hb_000329_010 Hb_149055_010--Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_149055_010--Hb_002809_080 Hb_000645_160 Hb_000645_160 Hb_149055_010--Hb_000645_160 Hb_000120_320 Hb_000120_320 Hb_149055_010--Hb_000120_320 Hb_002151_020 Hb_002151_020 Hb_001269_400--Hb_002151_020 Hb_002902_040 Hb_002902_040 Hb_001269_400--Hb_002902_040 Hb_000473_100 Hb_000473_100 Hb_001269_400--Hb_000473_100 Hb_007237_080 Hb_007237_080 Hb_001269_400--Hb_007237_080 Hb_000342_020 Hb_000342_020 Hb_001269_400--Hb_000342_020 Hb_008175_050 Hb_008175_050 Hb_001138_070--Hb_008175_050 Hb_001138_070--Hb_000645_160 Hb_003656_090 Hb_003656_090 Hb_001138_070--Hb_003656_090 Hb_001138_070--Hb_000329_010 Hb_002641_140 Hb_002641_140 Hb_001138_070--Hb_002641_140 Hb_000329_010--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_000329_010--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_000329_010--Hb_001769_070 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_000419_140 Hb_000419_140 Hb_000329_010--Hb_000419_140 Hb_002370_050 Hb_002370_050 Hb_002809_080--Hb_002370_050 Hb_002809_080--Hb_000076_280 Hb_005000_280 Hb_005000_280 Hb_002809_080--Hb_005000_280 Hb_002809_080--Hb_031224_010 Hb_000742_130 Hb_000742_130 Hb_000645_160--Hb_000742_130 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000645_160--Hb_000098_260 Hb_000181_260 Hb_000181_260 Hb_000120_320--Hb_000181_260 Hb_001677_090 Hb_001677_090 Hb_000120_320--Hb_001677_090 Hb_000120_320--Hb_002641_140 Hb_019026_050 Hb_019026_050 Hb_000120_320--Hb_019026_050 Hb_000120_320--Hb_001138_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11955 443.287 844.123 1953.38 2.54973 4.11319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209752 0.576933 0 643.025 717.953

CAGE analysis