Hb_005000_280

Information

Type -
Description -
Location Contig5000: 286830-289539
Sequence    

Annotation

kegg
ID rcu:RCOM_1047170
description acid phosphatase, putative (EC:3.1.3.5)
nr
ID XP_012076964.1
description PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
swissprot
ID A6LL96
description 5'-nucleotidase SurE OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=surE PE=3 SV=1
trembl
ID A0A067KNJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07431 PE=3 SV=1
Gene Ontology
ID GO:0008253
description acid phosphatase survival protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45827: 286888-289557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_280 0.0 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
2 Hb_002518_020 0.0777654887 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
3 Hb_002809_080 0.0870878848 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001769_070 0.0873147374 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
5 Hb_000076_280 0.0925313052 - - PREDICTED: pectinesterase-like [Populus euphratica]
6 Hb_000329_010 0.0966218023 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_027400_020 0.0975635792 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
8 Hb_002203_020 0.0984721574 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000834_130 0.1006008836 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001645_030 0.1038198589 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
11 Hb_027405_010 0.1049932355 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
12 Hb_000419_140 0.1119407346 - - Aquaporin PIP2.1, putative [Ricinus communis]
13 Hb_001117_180 0.1140129142 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
14 Hb_000997_240 0.1145937013 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
15 Hb_000568_020 0.1167503935 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
16 Hb_002171_020 0.1169908118 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
17 Hb_012395_050 0.1194791265 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
18 Hb_155444_010 0.119647252 - - -
19 Hb_029142_040 0.120445115 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
20 Hb_002304_100 0.121120098 - - hypothetical protein JCGZ_21524 [Jatropha curcas]

Gene co-expression network

sample Hb_005000_280 Hb_005000_280 Hb_002518_020 Hb_002518_020 Hb_005000_280--Hb_002518_020 Hb_002809_080 Hb_002809_080 Hb_005000_280--Hb_002809_080 Hb_001769_070 Hb_001769_070 Hb_005000_280--Hb_001769_070 Hb_000076_280 Hb_000076_280 Hb_005000_280--Hb_000076_280 Hb_000329_010 Hb_000329_010 Hb_005000_280--Hb_000329_010 Hb_027400_020 Hb_027400_020 Hb_005000_280--Hb_027400_020 Hb_002518_020--Hb_001769_070 Hb_004558_060 Hb_004558_060 Hb_002518_020--Hb_004558_060 Hb_002518_020--Hb_000076_280 Hb_002171_020 Hb_002171_020 Hb_002518_020--Hb_002171_020 Hb_002518_020--Hb_000329_010 Hb_002809_080--Hb_000329_010 Hb_002370_050 Hb_002370_050 Hb_002809_080--Hb_002370_050 Hb_002809_080--Hb_000076_280 Hb_149055_010 Hb_149055_010 Hb_002809_080--Hb_149055_010 Hb_031224_010 Hb_031224_010 Hb_002809_080--Hb_031224_010 Hb_001769_070--Hb_000076_280 Hb_001769_070--Hb_027400_020 Hb_001769_070--Hb_000329_010 Hb_000419_140 Hb_000419_140 Hb_001769_070--Hb_000419_140 Hb_000076_280--Hb_027400_020 Hb_000076_280--Hb_000419_140 Hb_000076_280--Hb_000329_010 Hb_002616_020 Hb_002616_020 Hb_000076_280--Hb_002616_020 Hb_000329_010--Hb_031224_010 Hb_000329_010--Hb_149055_010 Hb_000329_010--Hb_000419_140 Hb_027400_020--Hb_002616_020 Hb_027400_020--Hb_000419_140 Hb_002869_090 Hb_002869_090 Hb_027400_020--Hb_002869_090 Hb_027400_020--Hb_000329_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.207721 5.78742 9.08222 34.4666 0.0436344 0.073236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202951 0.10644 0.348999 7.83595 6.43823

CAGE analysis