Hb_000076_280

Information

Type -
Description -
Location Contig76: 203882-206177
Sequence    

Annotation

kegg
ID rcu:RCOM_0184760
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_011016647.1
description PREDICTED: pectinesterase-like [Populus euphratica]
swissprot
ID P09607
description Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2
trembl
ID B9SA40
description Pectinesterase OS=Ricinus communis GN=RCOM_0184760 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectin methyl esterase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57262: 203916-205999
cDNA
(Sanger)
(ID:Location)		 031_J14.ab1: 205111-205885

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_280 0.0 - - PREDICTED: pectinesterase-like [Populus euphratica]
2 Hb_027400_020 0.0436213352 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
3 Hb_001769_070 0.0540713759 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
4 Hb_000419_140 0.0575623981 - - Aquaporin PIP2.1, putative [Ricinus communis]
5 Hb_000329_010 0.0661337361 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
6 Hb_002616_020 0.0722649759 - - PREDICTED: peroxidase 3 [Jatropha curcas]
7 Hb_002809_080 0.086090142 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001777_010 0.0906906147 - - -
9 Hb_002869_090 0.0907016146 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
10 Hb_027405_010 0.0907756738 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
11 Hb_005000_280 0.0925313052 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
12 Hb_000834_130 0.0932029838 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002518_020 0.0936591416 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
14 Hb_002370_050 0.1039241623 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
15 Hb_031224_010 0.1116789357 - - -
16 Hb_002203_020 0.1126632813 - - conserved hypothetical protein [Ricinus communis]
17 Hb_178049_010 0.1128096297 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
18 Hb_000659_050 0.1132443447 - - PREDICTED: basic blue protein-like [Jatropha curcas]
19 Hb_141194_020 0.1180831884 - - carbohydrate transporter, putative [Ricinus communis]
20 Hb_003607_090 0.1189496986 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_280 Hb_000076_280 Hb_027400_020 Hb_027400_020 Hb_000076_280--Hb_027400_020 Hb_001769_070 Hb_001769_070 Hb_000076_280--Hb_001769_070 Hb_000419_140 Hb_000419_140 Hb_000076_280--Hb_000419_140 Hb_000329_010 Hb_000329_010 Hb_000076_280--Hb_000329_010 Hb_002616_020 Hb_002616_020 Hb_000076_280--Hb_002616_020 Hb_002809_080 Hb_002809_080 Hb_000076_280--Hb_002809_080 Hb_027400_020--Hb_002616_020 Hb_027400_020--Hb_000419_140 Hb_027400_020--Hb_001769_070 Hb_002869_090 Hb_002869_090 Hb_027400_020--Hb_002869_090 Hb_027400_020--Hb_000329_010 Hb_001769_070--Hb_000329_010 Hb_002518_020 Hb_002518_020 Hb_001769_070--Hb_002518_020 Hb_001769_070--Hb_000419_140 Hb_005000_280 Hb_005000_280 Hb_001769_070--Hb_005000_280 Hb_001777_010 Hb_001777_010 Hb_000419_140--Hb_001777_010 Hb_000419_140--Hb_000329_010 Hb_000419_140--Hb_002616_020 Hb_000329_010--Hb_002809_080 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_149055_010 Hb_149055_010 Hb_000329_010--Hb_149055_010 Hb_000352_360 Hb_000352_360 Hb_002616_020--Hb_000352_360 Hb_002616_020--Hb_002869_090 Hb_003849_170 Hb_003849_170 Hb_002616_020--Hb_003849_170 Hb_002370_050 Hb_002370_050 Hb_002809_080--Hb_002370_050 Hb_002809_080--Hb_005000_280 Hb_002809_080--Hb_149055_010 Hb_002809_080--Hb_031224_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.908924 15.7271 32.4595 144.365 0.471142 0.141941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0690662 33.6457 33.0957

CAGE analysis