Hb_031224_010

Information

Type -
Description -
Location Contig31224: 320-1044
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031224_010 0.0 - - -
2 Hb_003633_170 0.032960822 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000329_010 0.0797935133 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
4 Hb_002566_020 0.0799462169 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
5 Hb_007370_010 0.0812214979 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
6 Hb_002370_050 0.0873534252 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
7 Hb_002809_080 0.0937783066 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004893_010 0.0949683349 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
9 Hb_009456_010 0.0976744335 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
10 Hb_008304_050 0.099714105 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
11 Hb_004667_030 0.1029203042 - - hypothetical protein VITISV_034568 [Vitis vinifera]
12 Hb_000389_100 0.1045374237 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
13 Hb_003894_180 0.105168644 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
14 Hb_000419_140 0.1065576787 - - Aquaporin PIP2.1, putative [Ricinus communis]
15 Hb_149055_010 0.107124362 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
16 Hb_001777_010 0.1084671329 - - -
17 Hb_000076_280 0.1116789357 - - PREDICTED: pectinesterase-like [Populus euphratica]
18 Hb_141194_020 0.1173517227 - - carbohydrate transporter, putative [Ricinus communis]
19 Hb_005545_110 0.1178077082 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
20 Hb_002783_180 0.1195726401 - - Tubulin beta-6 chain [Gossypium arboreum]

Gene co-expression network

sample Hb_031224_010 Hb_031224_010 Hb_003633_170 Hb_003633_170 Hb_031224_010--Hb_003633_170 Hb_000329_010 Hb_000329_010 Hb_031224_010--Hb_000329_010 Hb_002566_020 Hb_002566_020 Hb_031224_010--Hb_002566_020 Hb_007370_010 Hb_007370_010 Hb_031224_010--Hb_007370_010 Hb_002370_050 Hb_002370_050 Hb_031224_010--Hb_002370_050 Hb_002809_080 Hb_002809_080 Hb_031224_010--Hb_002809_080 Hb_003633_170--Hb_007370_010 Hb_003633_170--Hb_002566_020 Hb_008304_050 Hb_008304_050 Hb_003633_170--Hb_008304_050 Hb_004893_010 Hb_004893_010 Hb_003633_170--Hb_004893_010 Hb_003894_180 Hb_003894_180 Hb_003633_170--Hb_003894_180 Hb_000329_010--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_000329_010--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_000329_010--Hb_001769_070 Hb_149055_010 Hb_149055_010 Hb_000329_010--Hb_149055_010 Hb_000419_140 Hb_000419_140 Hb_000329_010--Hb_000419_140 Hb_009456_010 Hb_009456_010 Hb_002566_020--Hb_009456_010 Hb_002783_180 Hb_002783_180 Hb_002566_020--Hb_002783_180 Hb_000389_100 Hb_000389_100 Hb_002566_020--Hb_000389_100 Hb_002566_020--Hb_007370_010 Hb_007370_010--Hb_003894_180 Hb_169077_030 Hb_169077_030 Hb_007370_010--Hb_169077_030 Hb_000152_570 Hb_000152_570 Hb_007370_010--Hb_000152_570 Hb_000103_300 Hb_000103_300 Hb_007370_010--Hb_000103_300 Hb_007237_080 Hb_007237_080 Hb_002370_050--Hb_007237_080 Hb_002370_050--Hb_002809_080 Hb_002370_050--Hb_000329_010 Hb_027405_010 Hb_027405_010 Hb_002370_050--Hb_027405_010 Hb_026144_040 Hb_026144_040 Hb_002370_050--Hb_026144_040 Hb_002809_080--Hb_000076_280 Hb_005000_280 Hb_005000_280 Hb_002809_080--Hb_005000_280 Hb_002809_080--Hb_149055_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.186449 0.33211 1.32494 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.500402 0.527801

CAGE analysis