Hb_027405_010

Information

Type -
Description -
Location Contig27405: 15515-17509
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24580g
description POPTRDRAFT_549181; hypothetical protein
nr
ID XP_011000258.1
description PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GJP3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24580g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28714: 15602-17716
cDNA
(Sanger)
(ID:Location)		 050_A03.ab1: 15602-17347

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027405_010 0.0 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
2 Hb_002384_030 0.0885016275 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000076_280 0.0907756738 - - PREDICTED: pectinesterase-like [Populus euphratica]
4 Hb_001117_180 0.0932313251 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
5 Hb_000453_290 0.0944846837 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
6 Hb_027400_020 0.0950254485 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
7 Hb_002370_050 0.0971713446 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
8 Hb_002518_020 0.1011038411 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
9 Hb_022693_090 0.1016043001 - - glycosyltransferase, putative [Ricinus communis]
10 Hb_002616_020 0.1025105321 - - PREDICTED: peroxidase 3 [Jatropha curcas]
11 Hb_002768_040 0.1026069627 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005000_280 0.1049932355 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
13 Hb_002627_010 0.1065090652 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
14 Hb_002592_070 0.107241025 - - hypothetical protein VITISV_020993 [Vitis vinifera]
15 Hb_008731_010 0.1116356084 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
16 Hb_001360_020 0.1130276575 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
17 Hb_000834_130 0.1132986591 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007403_100 0.1160373088 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
19 Hb_002869_090 0.1168178441 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
20 Hb_002000_100 0.1206308047 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]

Gene co-expression network

sample Hb_027405_010 Hb_027405_010 Hb_002384_030 Hb_002384_030 Hb_027405_010--Hb_002384_030 Hb_000076_280 Hb_000076_280 Hb_027405_010--Hb_000076_280 Hb_001117_180 Hb_001117_180 Hb_027405_010--Hb_001117_180 Hb_000453_290 Hb_000453_290 Hb_027405_010--Hb_000453_290 Hb_027400_020 Hb_027400_020 Hb_027405_010--Hb_027400_020 Hb_002370_050 Hb_002370_050 Hb_027405_010--Hb_002370_050 Hb_008731_010 Hb_008731_010 Hb_002384_030--Hb_008731_010 Hb_001360_020 Hb_001360_020 Hb_002384_030--Hb_001360_020 Hb_022693_090 Hb_022693_090 Hb_002384_030--Hb_022693_090 Hb_002000_100 Hb_002000_100 Hb_002384_030--Hb_002000_100 Hb_000344_030 Hb_000344_030 Hb_002384_030--Hb_000344_030 Hb_000076_280--Hb_027400_020 Hb_001769_070 Hb_001769_070 Hb_000076_280--Hb_001769_070 Hb_000419_140 Hb_000419_140 Hb_000076_280--Hb_000419_140 Hb_000329_010 Hb_000329_010 Hb_000076_280--Hb_000329_010 Hb_002616_020 Hb_002616_020 Hb_000076_280--Hb_002616_020 Hb_002809_080 Hb_002809_080 Hb_000076_280--Hb_002809_080 Hb_154038_040 Hb_154038_040 Hb_001117_180--Hb_154038_040 Hb_002811_110 Hb_002811_110 Hb_001117_180--Hb_002811_110 Hb_000162_070 Hb_000162_070 Hb_001117_180--Hb_000162_070 Hb_002592_070 Hb_002592_070 Hb_001117_180--Hb_002592_070 Hb_002522_040 Hb_002522_040 Hb_001117_180--Hb_002522_040 Hb_000453_290--Hb_002592_070 Hb_000453_290--Hb_022693_090 Hb_000468_050 Hb_000468_050 Hb_000453_290--Hb_000468_050 Hb_000453_290--Hb_002000_100 Hb_000453_290--Hb_001360_020 Hb_027400_020--Hb_002616_020 Hb_027400_020--Hb_000419_140 Hb_027400_020--Hb_001769_070 Hb_002869_090 Hb_002869_090 Hb_027400_020--Hb_002869_090 Hb_027400_020--Hb_000329_010 Hb_007237_080 Hb_007237_080 Hb_002370_050--Hb_007237_080 Hb_002370_050--Hb_002809_080 Hb_031224_010 Hb_031224_010 Hb_002370_050--Hb_031224_010 Hb_002370_050--Hb_000329_010 Hb_026144_040 Hb_026144_040 Hb_002370_050--Hb_026144_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0462992 0.85895 0.799817 4.88066 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.890152 0.93644

CAGE analysis