Hb_002592_070

Information

Type -
Description -
Location Contig2592: 110811-111728
Sequence    

Annotation

kegg
ID pop:POPTR_0010s25680g
description POPTRDRAFT_770695; hypothetical protein
nr
ID CAN79598.1
description hypothetical protein VITISV_020993 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C2G4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020993 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26896: 111719-111859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002592_070 0.0 - - hypothetical protein VITISV_020993 [Vitis vinifera]
2 Hb_000468_050 0.0732585849 - - -
3 Hb_000453_290 0.0762763415 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
4 Hb_012553_030 0.0781955489 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
5 Hb_009225_070 0.0840111735 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_001117_180 0.0939027557 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
7 Hb_022693_090 0.0995139018 - - glycosyltransferase, putative [Ricinus communis]
8 Hb_002627_010 0.1034191529 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
9 Hb_027405_010 0.107241025 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
10 Hb_002811_110 0.1085315496 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
11 Hb_034688_030 0.1169052644 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
12 Hb_000090_020 0.1192059143 - - acyltransferase, putative [Ricinus communis]
13 Hb_011314_010 0.1206654931 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
14 Hb_103541_010 0.121128677 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
15 Hb_000571_060 0.1229279738 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
16 Hb_000816_150 0.1257133359 - - oligopeptide transporter, putative [Ricinus communis]
17 Hb_001775_060 0.1281444641 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005056_120 0.1297471074 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000162_070 0.131882185 - - phospholipase C, putative [Ricinus communis]
20 Hb_002598_020 0.1323744385 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]

Gene co-expression network

sample Hb_002592_070 Hb_002592_070 Hb_000468_050 Hb_000468_050 Hb_002592_070--Hb_000468_050 Hb_000453_290 Hb_000453_290 Hb_002592_070--Hb_000453_290 Hb_012553_030 Hb_012553_030 Hb_002592_070--Hb_012553_030 Hb_009225_070 Hb_009225_070 Hb_002592_070--Hb_009225_070 Hb_001117_180 Hb_001117_180 Hb_002592_070--Hb_001117_180 Hb_022693_090 Hb_022693_090 Hb_002592_070--Hb_022693_090 Hb_000468_050--Hb_009225_070 Hb_000468_050--Hb_012553_030 Hb_000816_150 Hb_000816_150 Hb_000468_050--Hb_000816_150 Hb_000468_050--Hb_000453_290 Hb_004785_170 Hb_004785_170 Hb_000468_050--Hb_004785_170 Hb_000453_290--Hb_022693_090 Hb_002000_100 Hb_002000_100 Hb_000453_290--Hb_002000_100 Hb_027405_010 Hb_027405_010 Hb_000453_290--Hb_027405_010 Hb_001360_020 Hb_001360_020 Hb_000453_290--Hb_001360_020 Hb_015884_010 Hb_015884_010 Hb_012553_030--Hb_015884_010 Hb_103541_010 Hb_103541_010 Hb_012553_030--Hb_103541_010 Hb_000090_020 Hb_000090_020 Hb_012553_030--Hb_000090_020 Hb_012553_030--Hb_009225_070 Hb_009225_070--Hb_000816_150 Hb_011314_010 Hb_011314_010 Hb_009225_070--Hb_011314_010 Hb_009225_070--Hb_022693_090 Hb_154038_040 Hb_154038_040 Hb_001117_180--Hb_154038_040 Hb_002811_110 Hb_002811_110 Hb_001117_180--Hb_002811_110 Hb_001117_180--Hb_027405_010 Hb_000162_070 Hb_000162_070 Hb_001117_180--Hb_000162_070 Hb_002522_040 Hb_002522_040 Hb_001117_180--Hb_002522_040 Hb_002384_030 Hb_002384_030 Hb_022693_090--Hb_002384_030 Hb_022693_090--Hb_001360_020 Hb_022693_090--Hb_011314_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0246039 1.20594 0.438563 3.51938 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.679796 0.631482

CAGE analysis