Hb_015884_010

Information

Type -
Description -
Location Contig15884: 24957-28716
Sequence    

Annotation

kegg
ID rcu:RCOM_0611040
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012089395.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
swissprot
ID Q9LVP0
description Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=2 SV=1
trembl
ID A0A067JIJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23589 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable leucine-rich repeat receptor-like protein kinase at5g63930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14086: 25168-26623 , PASA_asmbl_14088: 27306-27802 , PASA_asmbl_14089: 28122-29021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015884_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
2 Hb_012553_030 0.0784952908 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
3 Hb_003939_090 0.0899552494 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_010642_010 0.0996008421 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
5 Hb_000714_070 0.1054711045 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
6 Hb_103541_010 0.1117780704 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
7 Hb_000468_050 0.1151322984 - - -
8 Hb_000090_020 0.1195857963 - - acyltransferase, putative [Ricinus communis]
9 Hb_009225_070 0.1206427537 - - tonoplast intrinsic protein, putative [Ricinus communis]
10 Hb_000732_100 0.121693174 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
11 Hb_183209_020 0.1240426438 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
12 Hb_050898_010 0.1286875203 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
13 Hb_000702_040 0.1289143929 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
14 Hb_001587_220 0.1291321945 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_008352_020 0.132857991 - - hypothetical protein [Cecembia lonarensis]
16 Hb_001016_040 0.1337994266 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
17 Hb_002592_070 0.1338124868 - - hypothetical protein VITISV_020993 [Vitis vinifera]
18 Hb_000816_150 0.1364222369 - - oligopeptide transporter, putative [Ricinus communis]
19 Hb_004586_230 0.1372888461 - - conserved hypothetical protein [Ricinus communis]
20 Hb_030827_080 0.1383758399 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]

Gene co-expression network

sample Hb_015884_010 Hb_015884_010 Hb_012553_030 Hb_012553_030 Hb_015884_010--Hb_012553_030 Hb_003939_090 Hb_003939_090 Hb_015884_010--Hb_003939_090 Hb_010642_010 Hb_010642_010 Hb_015884_010--Hb_010642_010 Hb_000714_070 Hb_000714_070 Hb_015884_010--Hb_000714_070 Hb_103541_010 Hb_103541_010 Hb_015884_010--Hb_103541_010 Hb_000468_050 Hb_000468_050 Hb_015884_010--Hb_000468_050 Hb_012553_030--Hb_000468_050 Hb_002592_070 Hb_002592_070 Hb_012553_030--Hb_002592_070 Hb_012553_030--Hb_103541_010 Hb_000090_020 Hb_000090_020 Hb_012553_030--Hb_000090_020 Hb_009225_070 Hb_009225_070 Hb_012553_030--Hb_009225_070 Hb_007313_050 Hb_007313_050 Hb_003939_090--Hb_007313_050 Hb_003939_090--Hb_010642_010 Hb_000702_040 Hb_000702_040 Hb_003939_090--Hb_000702_040 Hb_035006_010 Hb_035006_010 Hb_003939_090--Hb_035006_010 Hb_021443_020 Hb_021443_020 Hb_003939_090--Hb_021443_020 Hb_030827_080 Hb_030827_080 Hb_010642_010--Hb_030827_080 Hb_002739_160 Hb_002739_160 Hb_010642_010--Hb_002739_160 Hb_008352_020 Hb_008352_020 Hb_010642_010--Hb_008352_020 Hb_038718_010 Hb_038718_010 Hb_010642_010--Hb_038718_010 Hb_001198_180 Hb_001198_180 Hb_010642_010--Hb_001198_180 Hb_000714_070--Hb_010642_010 Hb_000714_070--Hb_030827_080 Hb_153180_010 Hb_153180_010 Hb_000714_070--Hb_153180_010 Hb_001856_130 Hb_001856_130 Hb_000714_070--Hb_001856_130 Hb_000120_600 Hb_000120_600 Hb_000714_070--Hb_000120_600 Hb_103541_010--Hb_000090_020 Hb_050898_010 Hb_050898_010 Hb_103541_010--Hb_050898_010 Hb_183209_020 Hb_183209_020 Hb_103541_010--Hb_183209_020 Hb_000537_090 Hb_000537_090 Hb_103541_010--Hb_000537_090 Hb_002598_020 Hb_002598_020 Hb_103541_010--Hb_002598_020 Hb_000468_050--Hb_009225_070 Hb_000816_150 Hb_000816_150 Hb_000468_050--Hb_000816_150 Hb_000468_050--Hb_002592_070 Hb_000453_290 Hb_000453_290 Hb_000468_050--Hb_000453_290 Hb_004785_170 Hb_004785_170 Hb_000468_050--Hb_004785_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00999615 5.7296 1.58207 9.96247 0.0398737 0.0592282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.56897 1.10231

CAGE analysis