Hb_000537_090

Information

Type -
Description -
Location Contig537: 167637-172001
Sequence    

Annotation

kegg
ID rcu:RCOM_0803020
description hypothetical protein
nr
ID XP_002516571.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS52
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0803020 PE=4 SV=1
Gene Ontology
ID GO:0016021
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000537_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001913_030 0.0643888005 - - ankyrin repeat protein [Bruguiera gymnorhiza]
3 Hb_000732_100 0.0668952868 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
4 Hb_002598_020 0.0713931789 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
5 Hb_001269_530 0.0869022433 - - ATP-binding cassette transporter, putative [Ricinus communis]
6 Hb_001318_230 0.0898121608 - - Boron transporter, putative [Ricinus communis]
7 Hb_001013_080 0.0939304656 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
8 Hb_000090_020 0.0978662266 - - acyltransferase, putative [Ricinus communis]
9 Hb_173107_020 0.0982382972 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
10 Hb_000991_080 0.0997675237 - - kinase, putative [Ricinus communis]
11 Hb_103541_010 0.1035842567 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
12 Hb_114733_010 0.1084765394 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
13 Hb_002335_010 0.1099888672 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
14 Hb_000816_150 0.1159773936 - - oligopeptide transporter, putative [Ricinus communis]
15 Hb_000384_020 0.1200202143 - - sucrose phosphate syntase, putative [Ricinus communis]
16 Hb_000162_070 0.1204866989 - - phospholipase C, putative [Ricinus communis]
17 Hb_002250_140 0.1216528877 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
18 Hb_008598_010 0.1241389761 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
19 Hb_000468_050 0.1267959734 - - -
20 Hb_000816_050 0.1296187921 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000537_090 Hb_000537_090 Hb_001913_030 Hb_001913_030 Hb_000537_090--Hb_001913_030 Hb_000732_100 Hb_000732_100 Hb_000537_090--Hb_000732_100 Hb_002598_020 Hb_002598_020 Hb_000537_090--Hb_002598_020 Hb_001269_530 Hb_001269_530 Hb_000537_090--Hb_001269_530 Hb_001318_230 Hb_001318_230 Hb_000537_090--Hb_001318_230 Hb_001013_080 Hb_001013_080 Hb_000537_090--Hb_001013_080 Hb_001913_030--Hb_001013_080 Hb_001913_030--Hb_001269_530 Hb_005074_010 Hb_005074_010 Hb_001913_030--Hb_005074_010 Hb_002335_010 Hb_002335_010 Hb_001913_030--Hb_002335_010 Hb_000589_330 Hb_000589_330 Hb_001913_030--Hb_000589_330 Hb_000732_100--Hb_001318_230 Hb_114733_010 Hb_114733_010 Hb_000732_100--Hb_114733_010 Hb_000732_100--Hb_001269_530 Hb_000090_020 Hb_000090_020 Hb_000732_100--Hb_000090_020 Hb_173107_020 Hb_173107_020 Hb_000732_100--Hb_173107_020 Hb_026144_040 Hb_026144_040 Hb_002598_020--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_002598_020--Hb_000162_070 Hb_002598_020--Hb_000090_020 Hb_008598_010 Hb_008598_010 Hb_002598_020--Hb_008598_010 Hb_002598_020--Hb_001318_230 Hb_001269_530--Hb_002335_010 Hb_001269_530--Hb_000589_330 Hb_001269_530--Hb_173107_020 Hb_001907_050 Hb_001907_050 Hb_001318_230--Hb_001907_050 Hb_001318_230--Hb_000090_020 Hb_004785_170 Hb_004785_170 Hb_001318_230--Hb_004785_170 Hb_000991_080 Hb_000991_080 Hb_001013_080--Hb_000991_080 Hb_003435_040 Hb_003435_040 Hb_001013_080--Hb_003435_040 Hb_003849_200 Hb_003849_200 Hb_001013_080--Hb_003849_200 Hb_001013_080--Hb_000162_070 Hb_008725_020 Hb_008725_020 Hb_001013_080--Hb_008725_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.326278 0.0829628 0.419554 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0768946 0.148588

CAGE analysis