Hb_001907_050

Information

Type -
Description -
Location Contig1907: 100694-103464
Sequence    

Annotation

kegg
ID tcc:TCM_044742
description Receptor like protein 6, putative
nr
ID XP_007010788.1
description Receptor like protein 6, putative [Theobroma cacao]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A061FRR7
description Receptor like protein 6, putative OS=Theobroma cacao GN=TCM_044742 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19008: 102421-102681 , PASA_asmbl_19009: 102790-102972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001907_050 0.0 - - Receptor like protein 6, putative [Theobroma cacao]
2 Hb_001318_230 0.0852927685 - - Boron transporter, putative [Ricinus communis]
3 Hb_000041_160 0.1089931375 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
4 Hb_030949_010 0.1222735993 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
5 Hb_002335_010 0.1255649623 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
6 Hb_123078_010 0.132651553 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
7 Hb_027892_050 0.1331003491 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
8 Hb_000537_090 0.1366047058 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000956_100 0.1368293602 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_000732_100 0.1377902356 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
11 Hb_004785_170 0.137858614 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_001295_050 0.1425727048 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
13 Hb_008948_010 0.1444297243 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
14 Hb_005048_090 0.1470566128 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
15 Hb_002598_020 0.1492234664 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
16 Hb_001269_530 0.1524171476 - - ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_002250_140 0.1525143153 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
18 Hb_000090_020 0.1553330024 - - acyltransferase, putative [Ricinus communis]
19 Hb_004218_290 0.1570751213 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
20 Hb_105814_020 0.1578364196 - - berberine bridge enzyme [Hevea brasiliensis]

Gene co-expression network

sample Hb_001907_050 Hb_001907_050 Hb_001318_230 Hb_001318_230 Hb_001907_050--Hb_001318_230 Hb_000041_160 Hb_000041_160 Hb_001907_050--Hb_000041_160 Hb_030949_010 Hb_030949_010 Hb_001907_050--Hb_030949_010 Hb_002335_010 Hb_002335_010 Hb_001907_050--Hb_002335_010 Hb_123078_010 Hb_123078_010 Hb_001907_050--Hb_123078_010 Hb_027892_050 Hb_027892_050 Hb_001907_050--Hb_027892_050 Hb_000732_100 Hb_000732_100 Hb_001318_230--Hb_000732_100 Hb_000537_090 Hb_000537_090 Hb_001318_230--Hb_000537_090 Hb_002598_020 Hb_002598_020 Hb_001318_230--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_001318_230--Hb_000090_020 Hb_004785_170 Hb_004785_170 Hb_001318_230--Hb_004785_170 Hb_000041_160--Hb_123078_010 Hb_000041_160--Hb_002335_010 Hb_105814_020 Hb_105814_020 Hb_000041_160--Hb_105814_020 Hb_027474_010 Hb_027474_010 Hb_000041_160--Hb_027474_010 Hb_004730_010 Hb_004730_010 Hb_000041_160--Hb_004730_010 Hb_000956_100 Hb_000956_100 Hb_000041_160--Hb_000956_100 Hb_030949_010--Hb_027892_050 Hb_008948_010 Hb_008948_010 Hb_030949_010--Hb_008948_010 Hb_030949_010--Hb_000956_100 Hb_019925_020 Hb_019925_020 Hb_030949_010--Hb_019925_020 Hb_007103_020 Hb_007103_020 Hb_030949_010--Hb_007103_020 Hb_002335_010--Hb_000956_100 Hb_002335_010--Hb_027892_050 Hb_001269_530 Hb_001269_530 Hb_002335_010--Hb_001269_530 Hb_005074_010 Hb_005074_010 Hb_002335_010--Hb_005074_010 Hb_001913_030 Hb_001913_030 Hb_002335_010--Hb_001913_030 Hb_123078_010--Hb_105814_020 Hb_123078_010--Hb_027474_010 Hb_002267_030 Hb_002267_030 Hb_123078_010--Hb_002267_030 Hb_011101_010 Hb_011101_010 Hb_123078_010--Hb_011101_010 Hb_004218_290 Hb_004218_290 Hb_123078_010--Hb_004218_290 Hb_027892_050--Hb_000956_100 Hb_027892_050--Hb_007103_020 Hb_001305_020 Hb_001305_020 Hb_027892_050--Hb_001305_020 Hb_002250_140 Hb_002250_140 Hb_027892_050--Hb_002250_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.03229 0.125472 2.33253 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.253676 1.10873

CAGE analysis