Hb_001913_030

Information

Type -
Description -
Location Contig1913: 13185-14997
Sequence    

Annotation

kegg
ID tcc:TCM_042904
description Ankyrin repeat-containing protein, putative
nr
ID BAG15869.1
description ankyrin repeat protein [Bruguiera gymnorhiza]
swissprot
ID Q02357
description Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2
trembl
ID B1Q4U3
description Ankyrin repeat protein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001913_030 0.0 - - ankyrin repeat protein [Bruguiera gymnorhiza]
2 Hb_000537_090 0.0643888005 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001013_080 0.0686138051 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
4 Hb_001269_530 0.0696730343 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_005074_010 0.0877810941 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
6 Hb_002335_010 0.0950327673 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
7 Hb_000589_330 0.095701867 - - kinase, putative [Ricinus communis]
8 Hb_173107_020 0.108234056 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
9 Hb_003835_030 0.1084570124 - - glycosyltransferase, partial [Arabidopsis thaliana]
10 Hb_002598_020 0.1091771741 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
11 Hb_000732_100 0.113415382 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
12 Hb_003435_040 0.1139894743 - - tonoplast intrinsic protein [Hevea brasiliensis]
13 Hb_000991_080 0.1140879687 - - kinase, putative [Ricinus communis]
14 Hb_008598_010 0.1148493929 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
15 Hb_001013_050 0.1160643358 - - unnamed protein product [Coffea canephora]
16 Hb_006736_040 0.1208699686 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
17 Hb_007007_090 0.1211572917 - - phospholipase d beta, putative [Ricinus communis]
18 Hb_024650_010 0.1220421684 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
19 Hb_002250_140 0.1222861469 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
20 Hb_028928_020 0.1241943956 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]

Gene co-expression network

sample Hb_001913_030 Hb_001913_030 Hb_000537_090 Hb_000537_090 Hb_001913_030--Hb_000537_090 Hb_001013_080 Hb_001013_080 Hb_001913_030--Hb_001013_080 Hb_001269_530 Hb_001269_530 Hb_001913_030--Hb_001269_530 Hb_005074_010 Hb_005074_010 Hb_001913_030--Hb_005074_010 Hb_002335_010 Hb_002335_010 Hb_001913_030--Hb_002335_010 Hb_000589_330 Hb_000589_330 Hb_001913_030--Hb_000589_330 Hb_000732_100 Hb_000732_100 Hb_000537_090--Hb_000732_100 Hb_002598_020 Hb_002598_020 Hb_000537_090--Hb_002598_020 Hb_000537_090--Hb_001269_530 Hb_001318_230 Hb_001318_230 Hb_000537_090--Hb_001318_230 Hb_000537_090--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_001013_080--Hb_000991_080 Hb_003435_040 Hb_003435_040 Hb_001013_080--Hb_003435_040 Hb_003849_200 Hb_003849_200 Hb_001013_080--Hb_003849_200 Hb_000162_070 Hb_000162_070 Hb_001013_080--Hb_000162_070 Hb_008725_020 Hb_008725_020 Hb_001013_080--Hb_008725_020 Hb_001269_530--Hb_002335_010 Hb_001269_530--Hb_000732_100 Hb_001269_530--Hb_000589_330 Hb_173107_020 Hb_173107_020 Hb_001269_530--Hb_173107_020 Hb_003562_040 Hb_003562_040 Hb_005074_010--Hb_003562_040 Hb_005074_010--Hb_002335_010 Hb_007257_070 Hb_007257_070 Hb_005074_010--Hb_007257_070 Hb_028928_020 Hb_028928_020 Hb_005074_010--Hb_028928_020 Hb_007007_090 Hb_007007_090 Hb_005074_010--Hb_007007_090 Hb_000956_100 Hb_000956_100 Hb_002335_010--Hb_000956_100 Hb_027892_050 Hb_027892_050 Hb_002335_010--Hb_027892_050 Hb_000041_160 Hb_000041_160 Hb_002335_010--Hb_000041_160 Hb_001013_050 Hb_001013_050 Hb_000589_330--Hb_001013_050 Hb_000589_330--Hb_007007_090 Hb_003835_030 Hb_003835_030 Hb_000589_330--Hb_003835_030 Hb_002097_130 Hb_002097_130 Hb_000589_330--Hb_002097_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.332488 0.10934 0.340822 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0814257 0.159748

CAGE analysis