Hb_002097_130

Information

Type -
Description -
Location Contig2097: 228157-229345
Sequence    

Annotation

kegg
ID egr:104425948
description aquaporin TIP1-1
nr
ID ACX37451.1
description tonoplast intrinsic protein [Hevea brasiliensis]
swissprot
ID P25818
description Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1
trembl
ID C9WSP9
description Tonoplast intrinsic protein OS=Hevea brasiliensis GN=TIP1;1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description aquaporin tip1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21692: 228160-229357 , PASA_asmbl_21693: 228838-229211
cDNA
(Sanger)
(ID:Location)		 007_L09.ab1: 228160-229034 , 013_D14.ab1: 228160-228979 , 015_D03.ab1: 228158-228938 , 016_K13.ab1: 228159-229069 , 018_P10.ab1: 228169-228609 , 026_M03.ab1: 228168-228371 , 027_N05.ab1: 228160-229004 , 028_B21.ab1: 228160-228901 , 034_B24.ab1: 228160-229104 , 038_A05.ab1: 228159-229106 , 038_O21.ab1: 228160-229077 , 040_C12.ab1: 228160-228988 , 043_O21.ab1: 228160-229103 , 044_L11.ab1: 228160-228944 , 045_M02.ab1: 228158-228918 , 045_P14.ab1: 228160-229004 , 053_C18.ab1: 228160-229007

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_130 0.0 - - tonoplast intrinsic protein [Hevea brasiliensis]
2 Hb_028928_020 0.074998696 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
3 Hb_033187_020 0.0975898202 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
4 Hb_000589_330 0.0982088569 - - kinase, putative [Ricinus communis]
5 Hb_003849_200 0.1003029762 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
6 Hb_003435_040 0.1040033794 - - tonoplast intrinsic protein [Hevea brasiliensis]
7 Hb_001013_050 0.1042226591 - - unnamed protein product [Coffea canephora]
8 Hb_006736_040 0.1069127328 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
9 Hb_024650_010 0.1091737284 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
10 Hb_002375_080 0.1118265546 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000054_140 0.1121458869 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
12 Hb_001013_080 0.1143231376 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_000391_060 0.1183032575 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
14 Hb_002370_060 0.1189412327 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
15 Hb_006573_280 0.1189702356 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
16 Hb_007441_360 0.1216453857 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
17 Hb_007007_090 0.1218108752 - - phospholipase d beta, putative [Ricinus communis]
18 Hb_004837_110 0.1235364692 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
19 Hb_001913_030 0.125411432 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_005074_010 0.1311024489 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]

Gene co-expression network

sample Hb_002097_130 Hb_002097_130 Hb_028928_020 Hb_028928_020 Hb_002097_130--Hb_028928_020 Hb_033187_020 Hb_033187_020 Hb_002097_130--Hb_033187_020 Hb_000589_330 Hb_000589_330 Hb_002097_130--Hb_000589_330 Hb_003849_200 Hb_003849_200 Hb_002097_130--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_002097_130--Hb_003435_040 Hb_001013_050 Hb_001013_050 Hb_002097_130--Hb_001013_050 Hb_028928_020--Hb_033187_020 Hb_005074_010 Hb_005074_010 Hb_028928_020--Hb_005074_010 Hb_006736_040 Hb_006736_040 Hb_028928_020--Hb_006736_040 Hb_000054_140 Hb_000054_140 Hb_028928_020--Hb_000054_140 Hb_024650_010 Hb_024650_010 Hb_028928_020--Hb_024650_010 Hb_033187_020--Hb_000054_140 Hb_033187_020--Hb_006736_040 Hb_000365_180 Hb_000365_180 Hb_033187_020--Hb_000365_180 Hb_033187_020--Hb_024650_010 Hb_000589_330--Hb_001013_050 Hb_007007_090 Hb_007007_090 Hb_000589_330--Hb_007007_090 Hb_001913_030 Hb_001913_030 Hb_000589_330--Hb_001913_030 Hb_003835_030 Hb_003835_030 Hb_000589_330--Hb_003835_030 Hb_001269_530 Hb_001269_530 Hb_000589_330--Hb_001269_530 Hb_001013_080 Hb_001013_080 Hb_003849_200--Hb_001013_080 Hb_001048_070 Hb_001048_070 Hb_003849_200--Hb_001048_070 Hb_008725_020 Hb_008725_020 Hb_003849_200--Hb_008725_020 Hb_003849_200--Hb_003435_040 Hb_000210_160 Hb_000210_160 Hb_003849_200--Hb_000210_160 Hb_004634_030 Hb_004634_030 Hb_003849_200--Hb_004634_030 Hb_003435_040--Hb_006736_040 Hb_003435_040--Hb_024650_010 Hb_003435_040--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_003435_040--Hb_000991_080 Hb_001518_030 Hb_001518_030 Hb_003435_040--Hb_001518_030 Hb_001013_050--Hb_003835_030 Hb_008092_020 Hb_008092_020 Hb_001013_050--Hb_008092_020 Hb_000472_020 Hb_000472_020 Hb_001013_050--Hb_000472_020 Hb_000613_250 Hb_000613_250 Hb_001013_050--Hb_000613_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24416 1254.83 689.254 1070.29 40.0363 7.08159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.587781 0.177818 0 291.814 520.151

CAGE analysis