Hb_028928_020

Information

Type -
Description -
Location Contig28928: 10308-15642
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006441945.1
description hypothetical protein CICLE_v10018504mg [Citrus clementina]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30248: 10849-11099 , PASA_asmbl_30251: 12531-12686 , PASA_asmbl_30252: 13277-15313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028928_020 0.0 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
2 Hb_033187_020 0.0675148881 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
3 Hb_002097_130 0.074998696 - - tonoplast intrinsic protein [Hevea brasiliensis]
4 Hb_005074_010 0.0992145551 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
5 Hb_006736_040 0.0994349333 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
6 Hb_000054_140 0.1008532163 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
7 Hb_024650_010 0.1009813495 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
8 Hb_004837_110 0.1011841816 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
9 Hb_007257_070 0.1016817757 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
10 Hb_000589_330 0.1051856045 - - kinase, putative [Ricinus communis]
11 Hb_000260_480 0.1058561779 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
12 Hb_001269_240 0.1079269845 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
13 Hb_000574_230 0.1110843839 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
14 Hb_001013_080 0.1131875342 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_007007_090 0.1140776334 - - phospholipase d beta, putative [Ricinus communis]
16 Hb_003849_200 0.115213742 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
17 Hb_003435_040 0.1167573729 - - tonoplast intrinsic protein [Hevea brasiliensis]
18 Hb_000472_020 0.1170320342 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
19 Hb_142026_010 0.1175175434 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
20 Hb_002375_080 0.1179681777 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_028928_020 Hb_028928_020 Hb_033187_020 Hb_033187_020 Hb_028928_020--Hb_033187_020 Hb_002097_130 Hb_002097_130 Hb_028928_020--Hb_002097_130 Hb_005074_010 Hb_005074_010 Hb_028928_020--Hb_005074_010 Hb_006736_040 Hb_006736_040 Hb_028928_020--Hb_006736_040 Hb_000054_140 Hb_000054_140 Hb_028928_020--Hb_000054_140 Hb_024650_010 Hb_024650_010 Hb_028928_020--Hb_024650_010 Hb_033187_020--Hb_000054_140 Hb_033187_020--Hb_002097_130 Hb_033187_020--Hb_006736_040 Hb_000365_180 Hb_000365_180 Hb_033187_020--Hb_000365_180 Hb_033187_020--Hb_024650_010 Hb_000589_330 Hb_000589_330 Hb_002097_130--Hb_000589_330 Hb_003849_200 Hb_003849_200 Hb_002097_130--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_002097_130--Hb_003435_040 Hb_001013_050 Hb_001013_050 Hb_002097_130--Hb_001013_050 Hb_003562_040 Hb_003562_040 Hb_005074_010--Hb_003562_040 Hb_001913_030 Hb_001913_030 Hb_005074_010--Hb_001913_030 Hb_002335_010 Hb_002335_010 Hb_005074_010--Hb_002335_010 Hb_007257_070 Hb_007257_070 Hb_005074_010--Hb_007257_070 Hb_007007_090 Hb_007007_090 Hb_005074_010--Hb_007007_090 Hb_006736_040--Hb_024650_010 Hb_006736_040--Hb_003435_040 Hb_000028_330 Hb_000028_330 Hb_006736_040--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_006736_040--Hb_001610_070 Hb_001013_080 Hb_001013_080 Hb_006736_040--Hb_001013_080 Hb_001518_030 Hb_001518_030 Hb_006736_040--Hb_001518_030 Hb_002370_060 Hb_002370_060 Hb_000054_140--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_000054_140--Hb_006573_280 Hb_004837_110 Hb_004837_110 Hb_000054_140--Hb_004837_110 Hb_001198_160 Hb_001198_160 Hb_000054_140--Hb_001198_160 Hb_000836_220 Hb_000836_220 Hb_000054_140--Hb_000836_220 Hb_024650_010--Hb_003435_040 Hb_024650_010--Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_024650_010--Hb_026048_030 Hb_024650_010--Hb_000028_330 Hb_002725_080 Hb_002725_080 Hb_024650_010--Hb_002725_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0156371 7.0068 4.56248 6.01441 0.0313085 0.00735487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0177455 0.0139637 0 1.68019 3.82855

CAGE analysis