Hb_002725_080

Information

Type -
Description -
Location Contig2725: 148237-158227
Sequence    

Annotation

kegg
ID rcu:RCOM_0916240
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002532331.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9LQN6
description Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=2 SV=1
trembl
ID B9T262
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0916240 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28488: 149426-149893 , PASA_asmbl_28489: 149964-150087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002725_080 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_004724_300 0.0842423984 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
3 Hb_024650_010 0.0873977858 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
4 Hb_010417_110 0.091382322 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000574_230 0.0949357462 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
6 Hb_009557_080 0.0965867516 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
7 Hb_006002_020 0.0968834128 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
8 Hb_000375_150 0.0986230963 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005618_010 0.1084919632 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
10 Hb_001269_240 0.1113347276 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
11 Hb_001518_030 0.1116873977 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_000329_170 0.1123476559 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
13 Hb_007007_030 0.1160020817 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005694_150 0.1169490681 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
15 Hb_000047_010 0.1178517397 - - PREDICTED: expansin-like A1 [Jatropha curcas]
16 Hb_002218_080 0.1185598999 - - Ankyrin repeat family protein, putative [Theobroma cacao]
17 Hb_001821_050 0.1193552825 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
18 Hb_004112_050 0.1196458738 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_113396_010 0.1209905737 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001310_080 0.1215062982 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002725_080 Hb_002725_080 Hb_004724_300 Hb_004724_300 Hb_002725_080--Hb_004724_300 Hb_024650_010 Hb_024650_010 Hb_002725_080--Hb_024650_010 Hb_010417_110 Hb_010417_110 Hb_002725_080--Hb_010417_110 Hb_000574_230 Hb_000574_230 Hb_002725_080--Hb_000574_230 Hb_009557_080 Hb_009557_080 Hb_002725_080--Hb_009557_080 Hb_006002_020 Hb_006002_020 Hb_002725_080--Hb_006002_020 Hb_001821_050 Hb_001821_050 Hb_004724_300--Hb_001821_050 Hb_134022_010 Hb_134022_010 Hb_004724_300--Hb_134022_010 Hb_007102_010 Hb_007102_010 Hb_004724_300--Hb_007102_010 Hb_004112_050 Hb_004112_050 Hb_004724_300--Hb_004112_050 Hb_001677_120 Hb_001677_120 Hb_004724_300--Hb_001677_120 Hb_006736_040 Hb_006736_040 Hb_024650_010--Hb_006736_040 Hb_003435_040 Hb_003435_040 Hb_024650_010--Hb_003435_040 Hb_001518_030 Hb_001518_030 Hb_024650_010--Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_024650_010--Hb_026048_030 Hb_000028_330 Hb_000028_330 Hb_024650_010--Hb_000028_330 Hb_010417_110--Hb_009557_080 Hb_004450_030 Hb_004450_030 Hb_010417_110--Hb_004450_030 Hb_010417_110--Hb_006002_020 Hb_000375_150 Hb_000375_150 Hb_010417_110--Hb_000375_150 Hb_005618_010 Hb_005618_010 Hb_010417_110--Hb_005618_010 Hb_007257_070 Hb_007257_070 Hb_000574_230--Hb_007257_070 Hb_001269_240 Hb_001269_240 Hb_000574_230--Hb_001269_240 Hb_026050_010 Hb_026050_010 Hb_000574_230--Hb_026050_010 Hb_000574_230--Hb_024650_010 Hb_007221_040 Hb_007221_040 Hb_000574_230--Hb_007221_040 Hb_009557_080--Hb_001269_240 Hb_115114_010 Hb_115114_010 Hb_009557_080--Hb_115114_010 Hb_004879_030 Hb_004879_030 Hb_009557_080--Hb_004879_030 Hb_000140_220 Hb_000140_220 Hb_009557_080--Hb_000140_220 Hb_000418_060 Hb_000418_060 Hb_006002_020--Hb_000418_060 Hb_000047_010 Hb_000047_010 Hb_006002_020--Hb_000047_010 Hb_006153_020 Hb_006153_020 Hb_006002_020--Hb_006153_020 Hb_004109_110 Hb_004109_110 Hb_006002_020--Hb_004109_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0149185 7.33872 3.93516 5.7799 0.00698132 0.0205008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0169261 0.0133191 0 0.338403 3.20198

CAGE analysis