Hb_000418_060

Information

Type -
Description -
Location Contig418: 88255-89055
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12650g
description POPTRDRAFT_720159; hypothetical protein
nr
ID XP_012075675.1
description PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
swissprot
ID Q9ZU38
description Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana GN=RPI2 PE=1 SV=1
trembl
ID A0A067KFG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09264 PE=3 SV=1
Gene Ontology
ID GO:0004751
description probable ribose-5-phosphate isomerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_060 0.0 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
2 Hb_006002_020 0.0776378876 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
3 Hb_000047_010 0.0776858803 - - PREDICTED: expansin-like A1 [Jatropha curcas]
4 Hb_001254_020 0.0982063354 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
5 Hb_000319_010 0.1090562381 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
6 Hb_011915_020 0.1092984698 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
7 Hb_002783_130 0.1123139897 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
8 Hb_000892_030 0.1164745937 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_006153_020 0.1186872197 - - vacuolar invertase [Manihot esculenta]
10 Hb_094437_050 0.1191336994 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
11 Hb_002374_030 0.1204783285 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
12 Hb_000032_090 0.1207504544 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004109_110 0.1228499428 - - dioxygenase family protein [Populus trichocarpa]
14 Hb_001019_020 0.124807865 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001610_070 0.124866939 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
16 Hb_007632_230 0.126181657 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
17 Hb_002725_080 0.1265850913 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_003078_070 0.1275078432 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
19 Hb_002400_040 0.1284850027 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
20 Hb_007007_030 0.1295931098 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000418_060 Hb_000418_060 Hb_006002_020 Hb_006002_020 Hb_000418_060--Hb_006002_020 Hb_000047_010 Hb_000047_010 Hb_000418_060--Hb_000047_010 Hb_001254_020 Hb_001254_020 Hb_000418_060--Hb_001254_020 Hb_000319_010 Hb_000319_010 Hb_000418_060--Hb_000319_010 Hb_011915_020 Hb_011915_020 Hb_000418_060--Hb_011915_020 Hb_002783_130 Hb_002783_130 Hb_000418_060--Hb_002783_130 Hb_006002_020--Hb_000047_010 Hb_006153_020 Hb_006153_020 Hb_006002_020--Hb_006153_020 Hb_002725_080 Hb_002725_080 Hb_006002_020--Hb_002725_080 Hb_004109_110 Hb_004109_110 Hb_006002_020--Hb_004109_110 Hb_010417_110 Hb_010417_110 Hb_006002_020--Hb_010417_110 Hb_000892_030 Hb_000892_030 Hb_000047_010--Hb_000892_030 Hb_000047_010--Hb_004109_110 Hb_002400_040 Hb_002400_040 Hb_000047_010--Hb_002400_040 Hb_000047_010--Hb_006153_020 Hb_000032_090 Hb_000032_090 Hb_001254_020--Hb_000032_090 Hb_004393_030 Hb_004393_030 Hb_001254_020--Hb_004393_030 Hb_007007_030 Hb_007007_030 Hb_001254_020--Hb_007007_030 Hb_000071_090 Hb_000071_090 Hb_001254_020--Hb_000071_090 Hb_001610_070 Hb_001610_070 Hb_001254_020--Hb_001610_070 Hb_004553_040 Hb_004553_040 Hb_000319_010--Hb_004553_040 Hb_007632_230 Hb_007632_230 Hb_000319_010--Hb_007632_230 Hb_004040_010 Hb_004040_010 Hb_000319_010--Hb_004040_010 Hb_001277_370 Hb_001277_370 Hb_000319_010--Hb_001277_370 Hb_167206_010 Hb_167206_010 Hb_000319_010--Hb_167206_010 Hb_002374_030 Hb_002374_030 Hb_000319_010--Hb_002374_030 Hb_011915_020--Hb_001610_070 Hb_011915_020--Hb_002374_030 Hb_029622_090 Hb_029622_090 Hb_011915_020--Hb_029622_090 Hb_001198_160 Hb_001198_160 Hb_011915_020--Hb_001198_160 Hb_010721_010 Hb_010721_010 Hb_011915_020--Hb_010721_010 Hb_002048_070 Hb_002048_070 Hb_011915_020--Hb_002048_070 Hb_001660_130 Hb_001660_130 Hb_002783_130--Hb_001660_130 Hb_070613_010 Hb_070613_010 Hb_002783_130--Hb_070613_010 Hb_004109_150 Hb_004109_150 Hb_002783_130--Hb_004109_150 Hb_002783_130--Hb_006002_020 Hb_134022_010 Hb_134022_010 Hb_002783_130--Hb_134022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.359666 24.5777 22.0976 21.0006 0.0824012 0.164914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202124 0.211906 0.09584 0.750469 7.55136

CAGE analysis