Hb_004553_040

Information

Type -
Description -
Location Contig4553: 66702-67523
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16050g
description POPTRDRAFT_767059; harpin-induced family protein
nr
ID XP_012066280.1
description PREDICTED: protein YLS9-like [Jatropha curcas]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID A0A067LFL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004553_040 0.0 - - PREDICTED: protein YLS9-like [Jatropha curcas]
2 Hb_167206_010 0.0520128083 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
3 Hb_001277_370 0.0651841411 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
4 Hb_001221_070 0.0683785027 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
5 Hb_007632_230 0.069556041 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
6 Hb_000319_010 0.0752945437 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
7 Hb_018563_010 0.080772995 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
8 Hb_054926_010 0.1027110966 - - glutamate receptor 2 plant, putative [Ricinus communis]
9 Hb_008019_010 0.1029041242 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
10 Hb_186995_010 0.1035458081 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
11 Hb_004040_010 0.1049592307 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
12 Hb_018134_010 0.106886533 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
13 Hb_007357_010 0.1166061086 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000438_200 0.1184488733 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
15 Hb_011794_050 0.1249469352 - - transcription factor, putative [Ricinus communis]
16 Hb_012496_020 0.1261693892 - - receptor serine/threonine kinase, putative [Ricinus communis]
17 Hb_026016_010 0.1293673399 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_059318_010 0.1297061693 - - glutamate receptor 2 plant, putative [Ricinus communis]
19 Hb_000926_210 0.1307642136 - - LIM and calponin domains-containing protein 1, putative [Theobroma cacao]
20 Hb_002301_340 0.1310838097 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]

Gene co-expression network

sample Hb_004553_040 Hb_004553_040 Hb_167206_010 Hb_167206_010 Hb_004553_040--Hb_167206_010 Hb_001277_370 Hb_001277_370 Hb_004553_040--Hb_001277_370 Hb_001221_070 Hb_001221_070 Hb_004553_040--Hb_001221_070 Hb_007632_230 Hb_007632_230 Hb_004553_040--Hb_007632_230 Hb_000319_010 Hb_000319_010 Hb_004553_040--Hb_000319_010 Hb_018563_010 Hb_018563_010 Hb_004553_040--Hb_018563_010 Hb_186995_010 Hb_186995_010 Hb_167206_010--Hb_186995_010 Hb_167206_010--Hb_001277_370 Hb_167206_010--Hb_018563_010 Hb_012496_020 Hb_012496_020 Hb_167206_010--Hb_012496_020 Hb_167206_010--Hb_000319_010 Hb_001277_370--Hb_001221_070 Hb_001277_370--Hb_007632_230 Hb_007357_010 Hb_007357_010 Hb_001277_370--Hb_007357_010 Hb_001277_370--Hb_000319_010 Hb_001221_070--Hb_007632_230 Hb_001221_070--Hb_007357_010 Hb_001221_070--Hb_167206_010 Hb_001221_070--Hb_000319_010 Hb_007632_230--Hb_000319_010 Hb_054926_010 Hb_054926_010 Hb_007632_230--Hb_054926_010 Hb_007632_230--Hb_007357_010 Hb_004040_010 Hb_004040_010 Hb_000319_010--Hb_004040_010 Hb_002374_030 Hb_002374_030 Hb_000319_010--Hb_002374_030 Hb_003502_040 Hb_003502_040 Hb_018563_010--Hb_003502_040 Hb_000438_200 Hb_000438_200 Hb_018563_010--Hb_000438_200 Hb_018563_010--Hb_000319_010 Hb_003248_030 Hb_003248_030 Hb_018563_010--Hb_003248_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 125.603 188.118 123.49 0 0.135356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0651105 0 0 0.559008 75.3273

CAGE analysis