Hb_018563_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig18563: 13754-14752
Sequence    

Annotation

kegg
ID rcu:RCOM_0273420
description Ethylene-responsive transcription factor, putative
nr
ID XP_012070058.1
description PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
swissprot
ID Q8VZ91
description Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2
trembl
ID A0A067L5Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03451 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018563_010 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
2 Hb_004553_040 0.080772995 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_167206_010 0.0813757314 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
4 Hb_003502_040 0.0842620315 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
5 Hb_000438_200 0.0916644972 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
6 Hb_000319_010 0.1006484908 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
7 Hb_003248_030 0.1029636742 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
8 Hb_000103_370 0.1063047699 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
9 Hb_008019_010 0.109446429 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
10 Hb_054926_010 0.110178031 - - glutamate receptor 2 plant, putative [Ricinus communis]
11 Hb_006873_010 0.1133363654 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_059318_010 0.1148873071 - - glutamate receptor 2 plant, putative [Ricinus communis]
13 Hb_007632_230 0.1178098875 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
14 Hb_001277_370 0.1185022398 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
15 Hb_029262_010 0.1190736131 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
16 Hb_004040_010 0.1195946375 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
17 Hb_115962_010 0.1205824243 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_186995_010 0.1228374242 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
19 Hb_004316_020 0.1239389114 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
20 Hb_000049_030 0.1257826316 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_018563_010 Hb_018563_010 Hb_004553_040 Hb_004553_040 Hb_018563_010--Hb_004553_040 Hb_167206_010 Hb_167206_010 Hb_018563_010--Hb_167206_010 Hb_003502_040 Hb_003502_040 Hb_018563_010--Hb_003502_040 Hb_000438_200 Hb_000438_200 Hb_018563_010--Hb_000438_200 Hb_000319_010 Hb_000319_010 Hb_018563_010--Hb_000319_010 Hb_003248_030 Hb_003248_030 Hb_018563_010--Hb_003248_030 Hb_004553_040--Hb_167206_010 Hb_001277_370 Hb_001277_370 Hb_004553_040--Hb_001277_370 Hb_001221_070 Hb_001221_070 Hb_004553_040--Hb_001221_070 Hb_007632_230 Hb_007632_230 Hb_004553_040--Hb_007632_230 Hb_004553_040--Hb_000319_010 Hb_186995_010 Hb_186995_010 Hb_167206_010--Hb_186995_010 Hb_167206_010--Hb_001277_370 Hb_012496_020 Hb_012496_020 Hb_167206_010--Hb_012496_020 Hb_167206_010--Hb_000319_010 Hb_003502_040--Hb_003248_030 Hb_029262_010 Hb_029262_010 Hb_003502_040--Hb_029262_010 Hb_004316_020 Hb_004316_020 Hb_003502_040--Hb_004316_020 Hb_003502_040--Hb_000438_200 Hb_005694_170 Hb_005694_170 Hb_003502_040--Hb_005694_170 Hb_115962_010 Hb_115962_010 Hb_000438_200--Hb_115962_010 Hb_000049_030 Hb_000049_030 Hb_000438_200--Hb_000049_030 Hb_000438_200--Hb_012496_020 Hb_000438_200--Hb_167206_010 Hb_001025_140 Hb_001025_140 Hb_000438_200--Hb_001025_140 Hb_000319_010--Hb_007632_230 Hb_004040_010 Hb_004040_010 Hb_000319_010--Hb_004040_010 Hb_000319_010--Hb_001277_370 Hb_002374_030 Hb_002374_030 Hb_000319_010--Hb_002374_030 Hb_003248_030--Hb_004316_020 Hb_003248_030--Hb_029262_010 Hb_003248_030--Hb_005694_170 Hb_000809_130 Hb_000809_130 Hb_003248_030--Hb_000809_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.32046 2.92387 1.85018 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0320971 0.816326

CAGE analysis