Hb_029262_010

Information

Type -
Description -
Location Contig29262: 575-1342
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001615mg
description hypothetical protein
nr
ID XP_011003373.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID W9SEU1
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Morus notabilis GN=L484_004999 PE=4 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30673: 1062-1306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029262_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
2 Hb_004308_030 0.0769679889 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_000160_190 0.0873593106 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
4 Hb_004202_030 0.0875363374 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
5 Hb_006501_080 0.0929314852 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
6 Hb_003502_040 0.0940722335 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
7 Hb_000049_030 0.0975935165 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003248_030 0.1057011876 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
9 Hb_004137_110 0.1112582934 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
10 Hb_005977_080 0.1135250407 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
11 Hb_003207_120 0.1143991376 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
12 Hb_018563_010 0.1190736131 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
13 Hb_001983_040 0.1234367549 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
14 Hb_001519_090 0.1238341463 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
15 Hb_049846_010 0.1241204919 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
16 Hb_019973_010 0.1243001054 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
17 Hb_000349_250 0.1247118709 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
18 Hb_059318_010 0.1276269798 - - glutamate receptor 2 plant, putative [Ricinus communis]
19 Hb_032731_010 0.1278114807 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
20 Hb_059429_010 0.1290938665 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_029262_010 Hb_029262_010 Hb_004308_030 Hb_004308_030 Hb_029262_010--Hb_004308_030 Hb_000160_190 Hb_000160_190 Hb_029262_010--Hb_000160_190 Hb_004202_030 Hb_004202_030 Hb_029262_010--Hb_004202_030 Hb_006501_080 Hb_006501_080 Hb_029262_010--Hb_006501_080 Hb_003502_040 Hb_003502_040 Hb_029262_010--Hb_003502_040 Hb_000049_030 Hb_000049_030 Hb_029262_010--Hb_000049_030 Hb_004308_030--Hb_006501_080 Hb_006620_030 Hb_006620_030 Hb_004308_030--Hb_006620_030 Hb_000809_220 Hb_000809_220 Hb_004308_030--Hb_000809_220 Hb_049846_010 Hb_049846_010 Hb_004308_030--Hb_049846_010 Hb_004308_030--Hb_004202_030 Hb_023640_020 Hb_023640_020 Hb_000160_190--Hb_023640_020 Hb_000160_190--Hb_049846_010 Hb_005977_080 Hb_005977_080 Hb_000160_190--Hb_005977_080 Hb_004137_110 Hb_004137_110 Hb_000160_190--Hb_004137_110 Hb_004128_150 Hb_004128_150 Hb_000160_190--Hb_004128_150 Hb_003207_120 Hb_003207_120 Hb_004202_030--Hb_003207_120 Hb_000086_470 Hb_000086_470 Hb_004202_030--Hb_000086_470 Hb_004202_030--Hb_006501_080 Hb_019973_010 Hb_019973_010 Hb_004202_030--Hb_019973_010 Hb_006501_080--Hb_006620_030 Hb_001680_020 Hb_001680_020 Hb_006501_080--Hb_001680_020 Hb_006501_080--Hb_003207_120 Hb_003248_030 Hb_003248_030 Hb_003502_040--Hb_003248_030 Hb_018563_010 Hb_018563_010 Hb_003502_040--Hb_018563_010 Hb_004316_020 Hb_004316_020 Hb_003502_040--Hb_004316_020 Hb_000438_200 Hb_000438_200 Hb_003502_040--Hb_000438_200 Hb_005694_170 Hb_005694_170 Hb_003502_040--Hb_005694_170 Hb_059429_010 Hb_059429_010 Hb_000049_030--Hb_059429_010 Hb_059318_010 Hb_059318_010 Hb_000049_030--Hb_059318_010 Hb_115962_010 Hb_115962_010 Hb_000049_030--Hb_115962_010 Hb_001983_040 Hb_001983_040 Hb_000049_030--Hb_001983_040 Hb_000049_030--Hb_000438_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.13378 16.0033 8.30876 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0908569 4.48046

CAGE analysis