Hb_005694_170

Information

Type -
Description -
Location Contig5694: 126502-130392
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09820g
description POPTRDRAFT_774540; hypothetical protein
nr
ID XP_012083136.1
description PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K830
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14211 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49255: 127642-130364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_170 0.0 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
2 Hb_003376_110 0.0721359277 - - conserved hypothetical protein [Ricinus communis]
3 Hb_164337_010 0.0788476324 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
4 Hb_007846_030 0.0862146534 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
5 Hb_003207_210 0.0897632703 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
6 Hb_000933_040 0.1080369219 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
7 Hb_003248_030 0.1081887125 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
8 Hb_000170_260 0.1135612736 - - amino acid transporter, putative [Ricinus communis]
9 Hb_001329_050 0.1149709598 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003502_040 0.1167527858 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
11 Hb_007426_190 0.1192914683 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
12 Hb_000056_290 0.1212572325 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004316_020 0.1250816992 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
14 Hb_097292_010 0.1252204589 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
15 Hb_001032_080 0.129594078 - - Ankyrin repeat protein [Medicago truncatula]
16 Hb_000213_020 0.132680886 - - conserved hypothetical protein [Ricinus communis]
17 Hb_022465_010 0.1425186673 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
18 Hb_004005_060 0.14379004 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
19 Hb_001288_040 0.1453708405 - - -
20 Hb_000878_080 0.1522145379 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]

Gene co-expression network

sample Hb_005694_170 Hb_005694_170 Hb_003376_110 Hb_003376_110 Hb_005694_170--Hb_003376_110 Hb_164337_010 Hb_164337_010 Hb_005694_170--Hb_164337_010 Hb_007846_030 Hb_007846_030 Hb_005694_170--Hb_007846_030 Hb_003207_210 Hb_003207_210 Hb_005694_170--Hb_003207_210 Hb_000933_040 Hb_000933_040 Hb_005694_170--Hb_000933_040 Hb_003248_030 Hb_003248_030 Hb_005694_170--Hb_003248_030 Hb_003376_110--Hb_003207_210 Hb_003376_110--Hb_007846_030 Hb_003376_110--Hb_164337_010 Hb_000160_190 Hb_000160_190 Hb_003376_110--Hb_000160_190 Hb_000056_290 Hb_000056_290 Hb_003376_110--Hb_000056_290 Hb_164337_010--Hb_003207_210 Hb_004316_020 Hb_004316_020 Hb_164337_010--Hb_004316_020 Hb_000371_030 Hb_000371_030 Hb_164337_010--Hb_000371_030 Hb_009421_090 Hb_009421_090 Hb_164337_010--Hb_009421_090 Hb_097292_010 Hb_097292_010 Hb_007846_030--Hb_097292_010 Hb_007426_190 Hb_007426_190 Hb_007846_030--Hb_007426_190 Hb_005731_040 Hb_005731_040 Hb_007846_030--Hb_005731_040 Hb_000878_080 Hb_000878_080 Hb_007846_030--Hb_000878_080 Hb_003207_210--Hb_004316_020 Hb_003207_210--Hb_009421_090 Hb_003207_210--Hb_000371_030 Hb_001329_050 Hb_001329_050 Hb_000933_040--Hb_001329_050 Hb_000213_020 Hb_000213_020 Hb_000933_040--Hb_000213_020 Hb_000933_040--Hb_000056_290 Hb_004005_060 Hb_004005_060 Hb_000933_040--Hb_004005_060 Hb_002028_270 Hb_002028_270 Hb_000933_040--Hb_002028_270 Hb_003502_040 Hb_003502_040 Hb_003248_030--Hb_003502_040 Hb_003248_030--Hb_004316_020 Hb_018563_010 Hb_018563_010 Hb_003248_030--Hb_018563_010 Hb_029262_010 Hb_029262_010 Hb_003248_030--Hb_029262_010 Hb_000809_130 Hb_000809_130 Hb_003248_030--Hb_000809_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.89821 29.5935 22.8223 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0140028 2.37342

CAGE analysis