Hb_000056_290

Information

Type -
Description -
Location Contig56: 418663-420186
Sequence    

Annotation

kegg
ID rcu:RCOM_0836100
description hypothetical protein
nr
ID XP_002522424.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SWI1
description Protein PHYTOCHROME KINASE SUBSTRATE 1 OS=Arabidopsis thaliana GN=PKS1 PE=1 SV=2
trembl
ID B9S8V5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48734: 419930-420413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001329_050 0.0546167554 - - conserved hypothetical protein [Ricinus communis]
3 Hb_120289_010 0.0703754934 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
4 Hb_006573_310 0.0883439015 - - Tellurite resistance protein tehA, putative [Ricinus communis]
5 Hb_000933_040 0.0915739185 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
6 Hb_078448_010 0.1023877305 - - hypothetical protein L484_017526 [Morus notabilis]
7 Hb_000527_020 0.1031892915 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
8 Hb_000162_160 0.1047023342 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
9 Hb_003376_110 0.1097002498 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000700_020 0.1136064521 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
11 Hb_118282_020 0.1161284022 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
12 Hb_022845_010 0.1176643019 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
13 Hb_004774_080 0.1178634438 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005694_170 0.1212572325 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
15 Hb_005398_050 0.1243775414 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
16 Hb_004225_160 0.1245092354 - - PREDICTED: kiwellin-like [Jatropha curcas]
17 Hb_003464_010 0.1292839998 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000654_060 0.1303348458 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
19 Hb_000890_140 0.1303740374 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
20 Hb_034498_010 0.1312992771 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_290 Hb_000056_290 Hb_001329_050 Hb_001329_050 Hb_000056_290--Hb_001329_050 Hb_120289_010 Hb_120289_010 Hb_000056_290--Hb_120289_010 Hb_006573_310 Hb_006573_310 Hb_000056_290--Hb_006573_310 Hb_000933_040 Hb_000933_040 Hb_000056_290--Hb_000933_040 Hb_078448_010 Hb_078448_010 Hb_000056_290--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_000056_290--Hb_000527_020 Hb_001329_050--Hb_000933_040 Hb_003464_010 Hb_003464_010 Hb_001329_050--Hb_003464_010 Hb_000878_080 Hb_000878_080 Hb_001329_050--Hb_000878_080 Hb_001329_050--Hb_120289_010 Hb_001329_050--Hb_078448_010 Hb_000162_160 Hb_000162_160 Hb_120289_010--Hb_000162_160 Hb_022845_010 Hb_022845_010 Hb_120289_010--Hb_022845_010 Hb_000700_020 Hb_000700_020 Hb_120289_010--Hb_000700_020 Hb_001322_220 Hb_001322_220 Hb_120289_010--Hb_001322_220 Hb_004774_080 Hb_004774_080 Hb_006573_310--Hb_004774_080 Hb_007245_030 Hb_007245_030 Hb_006573_310--Hb_007245_030 Hb_005914_100 Hb_005914_100 Hb_006573_310--Hb_005914_100 Hb_004241_160 Hb_004241_160 Hb_006573_310--Hb_004241_160 Hb_006573_310--Hb_078448_010 Hb_006573_310--Hb_000527_020 Hb_000213_020 Hb_000213_020 Hb_000933_040--Hb_000213_020 Hb_004005_060 Hb_004005_060 Hb_000933_040--Hb_004005_060 Hb_005694_170 Hb_005694_170 Hb_000933_040--Hb_005694_170 Hb_002028_270 Hb_002028_270 Hb_000933_040--Hb_002028_270 Hb_005398_050 Hb_005398_050 Hb_078448_010--Hb_005398_050 Hb_078448_010--Hb_000527_020 Hb_118282_020 Hb_118282_020 Hb_078448_010--Hb_118282_020 Hb_078448_010--Hb_004774_080 Hb_000890_140 Hb_000890_140 Hb_000527_020--Hb_000890_140 Hb_000527_020--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000527_020--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_000527_020--Hb_021576_050 Hb_001390_040 Hb_001390_040 Hb_000527_020--Hb_001390_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.223241 2.9913 2.17444 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0288824 0.101006

CAGE analysis