Hb_004005_060

Information

Type -
Description -
Location Contig4005: 67056-70024
Sequence    

Annotation

kegg
ID rcu:RCOM_0926370
description sigma factor sigb regulation protein rsbq, putative
nr
ID XP_002515580.1
description sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
swissprot
ID Q10QA5
description Probable strigolactone esterase D14 OS=Oryza sativa subsp. japonica GN=D14 PE=1 SV=1
trembl
ID B9RPB1
description Sigma factor sigb regulation protein rsbq, putative OS=Ricinus communis GN=RCOM_0926370 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable strigolactone esterase d14 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39829: 66857-70138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004005_060 0.0 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
2 Hb_000213_020 0.0588588996 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002203_010 0.0848687001 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
4 Hb_000359_100 0.0859221991 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002028_270 0.0868004426 - - Pectinesterase-1 precursor, putative [Ricinus communis]
6 Hb_000862_050 0.0913532918 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
7 Hb_000878_080 0.0929947475 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
8 Hb_000933_040 0.0991082613 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_001159_090 0.0996023957 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
10 Hb_005276_190 0.1041439213 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
11 Hb_000375_260 0.1059286579 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
12 Hb_001085_160 0.1124207483 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
13 Hb_000830_010 0.1143709303 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006810_040 0.1170299691 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_002894_060 0.1172025169 - - respiratory burst oxidase D [Manihot esculenta]
16 Hb_024714_090 0.1178925609 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
17 Hb_001349_050 0.1196533745 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
18 Hb_006120_130 0.1196730516 - - -
19 Hb_002818_060 0.1243805096 - - zinc finger protein, putative [Ricinus communis]
20 Hb_002053_100 0.1249278986 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004005_060 Hb_004005_060 Hb_000213_020 Hb_000213_020 Hb_004005_060--Hb_000213_020 Hb_002203_010 Hb_002203_010 Hb_004005_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_004005_060--Hb_000359_100 Hb_002028_270 Hb_002028_270 Hb_004005_060--Hb_002028_270 Hb_000862_050 Hb_000862_050 Hb_004005_060--Hb_000862_050 Hb_000878_080 Hb_000878_080 Hb_004005_060--Hb_000878_080 Hb_000213_020--Hb_002203_010 Hb_001085_160 Hb_001085_160 Hb_000213_020--Hb_001085_160 Hb_000933_040 Hb_000933_040 Hb_000213_020--Hb_000933_040 Hb_000213_020--Hb_000878_080 Hb_024714_090 Hb_024714_090 Hb_000213_020--Hb_024714_090 Hb_002203_010--Hb_000359_100 Hb_001349_050 Hb_001349_050 Hb_002203_010--Hb_001349_050 Hb_002818_060 Hb_002818_060 Hb_002203_010--Hb_002818_060 Hb_002203_010--Hb_000878_080 Hb_000359_100--Hb_002028_270 Hb_000359_100--Hb_002818_060 Hb_001007_020 Hb_001007_020 Hb_000359_100--Hb_001007_020 Hb_001159_090 Hb_001159_090 Hb_000359_100--Hb_001159_090 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_002028_270--Hb_006810_040 Hb_002028_270--Hb_000878_080 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020 Hb_008725_100 Hb_008725_100 Hb_000862_050--Hb_008725_100 Hb_000592_100 Hb_000592_100 Hb_000862_050--Hb_000592_100 Hb_006120_130 Hb_006120_130 Hb_000862_050--Hb_006120_130 Hb_000862_050--Hb_006810_040 Hb_007126_010 Hb_007126_010 Hb_000862_050--Hb_007126_010 Hb_097292_010 Hb_097292_010 Hb_000878_080--Hb_097292_010 Hb_001856_210 Hb_001856_210 Hb_000878_080--Hb_001856_210 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.28436 15.7282 12.993 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.07759 2.45749

CAGE analysis