Hb_001085_160

Information

Type -
Description -
Location Contig1085: 115411-118394
Sequence    

Annotation

kegg
ID mdm:103443473
description glucan endo-1,3-beta-glucosidase-like protein 3
nr
ID XP_012071128.1
description PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
swissprot
ID Q9FZ86
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
trembl
ID A0A067KWK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01120 PE=4 SV=1
Gene Ontology
ID GO:0016787
description plasmodesmata callose-binding protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02573: 115233-115464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_160 0.0 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
2 Hb_024714_090 0.0786816109 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
3 Hb_001571_080 0.0817108185 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
4 Hb_000213_020 0.0865663162 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000830_010 0.11084857 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004005_060 0.1124207483 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
7 Hb_005568_140 0.1151844527 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000027_160 0.1157297816 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
9 Hb_007474_020 0.1160946689 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_002203_010 0.120687941 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
11 Hb_002918_220 0.1214608075 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
12 Hb_000862_050 0.1221284941 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
13 Hb_004109_100 0.123613423 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
14 Hb_001439_240 0.1239736178 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
15 Hb_000576_140 0.1270012864 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
16 Hb_019973_010 0.1293374602 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
17 Hb_005276_190 0.1326794529 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
18 Hb_004223_080 0.1329422782 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_002053_100 0.1350023014 - - actin binding protein, putative [Ricinus communis]
20 Hb_000038_070 0.1364014838 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001085_160 Hb_001085_160 Hb_024714_090 Hb_024714_090 Hb_001085_160--Hb_024714_090 Hb_001571_080 Hb_001571_080 Hb_001085_160--Hb_001571_080 Hb_000213_020 Hb_000213_020 Hb_001085_160--Hb_000213_020 Hb_000830_010 Hb_000830_010 Hb_001085_160--Hb_000830_010 Hb_004005_060 Hb_004005_060 Hb_001085_160--Hb_004005_060 Hb_005568_140 Hb_005568_140 Hb_001085_160--Hb_005568_140 Hb_000027_160 Hb_000027_160 Hb_024714_090--Hb_000027_160 Hb_024714_090--Hb_000213_020 Hb_024714_090--Hb_001571_080 Hb_001633_160 Hb_001633_160 Hb_024714_090--Hb_001633_160 Hb_002203_010 Hb_002203_010 Hb_024714_090--Hb_002203_010 Hb_001571_080--Hb_005568_140 Hb_002918_220 Hb_002918_220 Hb_001571_080--Hb_002918_220 Hb_007237_020 Hb_007237_020 Hb_001571_080--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_001571_080--Hb_027337_010 Hb_001571_080--Hb_000027_160 Hb_000213_020--Hb_004005_060 Hb_000213_020--Hb_002203_010 Hb_000933_040 Hb_000933_040 Hb_000213_020--Hb_000933_040 Hb_000878_080 Hb_000878_080 Hb_000213_020--Hb_000878_080 Hb_001439_240 Hb_001439_240 Hb_000830_010--Hb_001439_240 Hb_002053_100 Hb_002053_100 Hb_000830_010--Hb_002053_100 Hb_005276_190 Hb_005276_190 Hb_000830_010--Hb_005276_190 Hb_000340_550 Hb_000340_550 Hb_000830_010--Hb_000340_550 Hb_000576_140 Hb_000576_140 Hb_000830_010--Hb_000576_140 Hb_181744_010 Hb_181744_010 Hb_000830_010--Hb_181744_010 Hb_004005_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_004005_060--Hb_000359_100 Hb_002028_270 Hb_002028_270 Hb_004005_060--Hb_002028_270 Hb_000862_050 Hb_000862_050 Hb_004005_060--Hb_000862_050 Hb_004005_060--Hb_000878_080 Hb_005568_140--Hb_002918_220 Hb_004109_100 Hb_004109_100 Hb_005568_140--Hb_004109_100 Hb_002170_060 Hb_002170_060 Hb_005568_140--Hb_002170_060 Hb_010267_020 Hb_010267_020 Hb_005568_140--Hb_010267_020 Hb_004422_030 Hb_004422_030 Hb_005568_140--Hb_004422_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0403723 0.81574 6.35927 3.64165 0.0379116 0.0359137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0735306 0 0.330728 0.860628

CAGE analysis