Hb_004422_030

Information

Type -
Description -
Location Contig4422: 46694-49882
Sequence    

Annotation

kegg
ID csv:101214088
description SNRK2.1; serine/threonine-protein kinase SRK2H-like
nr
ID XP_012087257.1
description PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
swissprot
ID Q7XQP4
description Serine/threonine-protein kinase SAPK7 OS=Oryza sativa subsp. japonica GN=SAPK7 PE=2 SV=2
trembl
ID A0A067JMN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24259 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase srk2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42730: 46698-47233 , PASA_asmbl_42731: 47804-50035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004422_030 0.0 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
2 Hb_002918_220 0.0781697585 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
3 Hb_004225_160 0.0881517369 - - PREDICTED: kiwellin-like [Jatropha curcas]
4 Hb_000083_280 0.0881821686 - - copper ion binding protein, putative [Ricinus communis]
5 Hb_001439_240 0.0924817011 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
6 Hb_039812_010 0.0952101773 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
7 Hb_010267_020 0.0974733046 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
8 Hb_004109_100 0.0988469121 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
9 Hb_000316_070 0.0988700984 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
10 Hb_004007_080 0.0995491822 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
11 Hb_005568_140 0.0997992511 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000340_550 0.1006741961 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
13 Hb_000527_030 0.1015281217 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
14 Hb_169753_010 0.1021387372 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
15 Hb_158845_010 0.1023460359 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
16 Hb_015299_040 0.1037655419 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
17 Hb_007245_030 0.1047519125 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000283_090 0.1072738449 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_103339_010 0.1076149802 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_011849_010 0.1098909544 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_004422_030 Hb_004422_030 Hb_002918_220 Hb_002918_220 Hb_004422_030--Hb_002918_220 Hb_004225_160 Hb_004225_160 Hb_004422_030--Hb_004225_160 Hb_000083_280 Hb_000083_280 Hb_004422_030--Hb_000083_280 Hb_001439_240 Hb_001439_240 Hb_004422_030--Hb_001439_240 Hb_039812_010 Hb_039812_010 Hb_004422_030--Hb_039812_010 Hb_010267_020 Hb_010267_020 Hb_004422_030--Hb_010267_020 Hb_005568_140 Hb_005568_140 Hb_002918_220--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002918_220--Hb_004109_100 Hb_001571_080 Hb_001571_080 Hb_002918_220--Hb_001571_080 Hb_002918_220--Hb_001439_240 Hb_002918_220--Hb_010267_020 Hb_007245_030 Hb_007245_030 Hb_004225_160--Hb_007245_030 Hb_000038_070 Hb_000038_070 Hb_004225_160--Hb_000038_070 Hb_000614_200 Hb_000614_200 Hb_004225_160--Hb_000614_200 Hb_006573_310 Hb_006573_310 Hb_004225_160--Hb_006573_310 Hb_027905_040 Hb_027905_040 Hb_004225_160--Hb_027905_040 Hb_000083_280--Hb_039812_010 Hb_000527_030 Hb_000527_030 Hb_000083_280--Hb_000527_030 Hb_000283_090 Hb_000283_090 Hb_000083_280--Hb_000283_090 Hb_113974_010 Hb_113974_010 Hb_000083_280--Hb_113974_010 Hb_004007_080 Hb_004007_080 Hb_000083_280--Hb_004007_080 Hb_002053_100 Hb_002053_100 Hb_001439_240--Hb_002053_100 Hb_000830_010 Hb_000830_010 Hb_001439_240--Hb_000830_010 Hb_000340_550 Hb_000340_550 Hb_001439_240--Hb_000340_550 Hb_181744_010 Hb_181744_010 Hb_001439_240--Hb_181744_010 Hb_005276_190 Hb_005276_190 Hb_001439_240--Hb_005276_190 Hb_003777_260 Hb_003777_260 Hb_001439_240--Hb_003777_260 Hb_001864_040 Hb_001864_040 Hb_039812_010--Hb_001864_040 Hb_000316_070 Hb_000316_070 Hb_039812_010--Hb_000316_070 Hb_004459_030 Hb_004459_030 Hb_039812_010--Hb_004459_030 Hb_033152_060 Hb_033152_060 Hb_039812_010--Hb_033152_060 Hb_000200_270 Hb_000200_270 Hb_010267_020--Hb_000200_270 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_010267_020--Hb_005568_140 Hb_005695_070 Hb_005695_070 Hb_010267_020--Hb_005695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0275974 0.405351 6.44405 2.17265 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.175864 0.569423

CAGE analysis