Hb_000200_270

Information

Type -
Description -
Location Contig200: 311893-314576
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12940g
description POPTRDRAFT_769594; hypothetical protein
nr
ID XP_012075719.1
description PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8LFD1
description Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1
trembl
ID B9HWC7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12940g PE=4 SV=1
Gene Ontology
ID GO:0005887
description lipid phosphate phosphatase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20220: 311803-312416 , PASA_asmbl_20221: 312431-313328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_270 0.0 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
2 Hb_010267_020 0.0775392186 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
3 Hb_000856_230 0.1002873285 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
4 Hb_002918_220 0.1024075211 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
5 Hb_005695_070 0.1050546291 - - Cysteine-rich RLK 29 [Theobroma cacao]
6 Hb_002311_500 0.1053546008 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
7 Hb_009421_090 0.105453634 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
8 Hb_000392_170 0.107055343 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
9 Hb_169753_010 0.1072132543 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
10 Hb_005568_140 0.1089873089 - - ATP binding protein, putative [Ricinus communis]
11 Hb_002200_020 0.1132591185 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
12 Hb_012753_150 0.1145457656 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
13 Hb_004422_030 0.1183758609 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
14 Hb_001571_080 0.1211448166 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
15 Hb_003767_030 0.1279594234 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
16 Hb_007441_290 0.1307497383 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
17 Hb_027337_010 0.1312647265 - - Potassium transporter, putative [Ricinus communis]
18 Hb_002205_160 0.1321319192 - - chalcone isomerase [Hibiscus cannabinus]
19 Hb_004316_020 0.132464557 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
20 Hb_004567_070 0.1351668836 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000200_270 Hb_000200_270 Hb_010267_020 Hb_010267_020 Hb_000200_270--Hb_010267_020 Hb_000856_230 Hb_000856_230 Hb_000200_270--Hb_000856_230 Hb_002918_220 Hb_002918_220 Hb_000200_270--Hb_002918_220 Hb_005695_070 Hb_005695_070 Hb_000200_270--Hb_005695_070 Hb_002311_500 Hb_002311_500 Hb_000200_270--Hb_002311_500 Hb_009421_090 Hb_009421_090 Hb_000200_270--Hb_009421_090 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_010267_020--Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_010267_020--Hb_005568_140 Hb_004422_030 Hb_004422_030 Hb_010267_020--Hb_004422_030 Hb_010267_020--Hb_005695_070 Hb_000856_230--Hb_009421_090 Hb_014700_020 Hb_014700_020 Hb_000856_230--Hb_014700_020 Hb_002540_100 Hb_002540_100 Hb_000856_230--Hb_002540_100 Hb_004316_020 Hb_004316_020 Hb_000856_230--Hb_004316_020 Hb_000371_030 Hb_000371_030 Hb_000856_230--Hb_000371_030 Hb_002918_220--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002918_220--Hb_004109_100 Hb_002918_220--Hb_004422_030 Hb_001571_080 Hb_001571_080 Hb_002918_220--Hb_001571_080 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240 Hb_149985_030 Hb_149985_030 Hb_005695_070--Hb_149985_030 Hb_001001_010 Hb_001001_010 Hb_005695_070--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_005695_070--Hb_000349_170 Hb_022406_010 Hb_022406_010 Hb_005695_070--Hb_022406_010 Hb_004567_070 Hb_004567_070 Hb_002311_500--Hb_004567_070 Hb_009907_020 Hb_009907_020 Hb_002311_500--Hb_009907_020 Hb_000392_170 Hb_000392_170 Hb_002311_500--Hb_000392_170 Hb_002995_010 Hb_002995_010 Hb_002311_500--Hb_002995_010 Hb_002200_020 Hb_002200_020 Hb_002311_500--Hb_002200_020 Hb_009421_090--Hb_014700_020 Hb_115962_010 Hb_115962_010 Hb_009421_090--Hb_115962_010 Hb_003767_030 Hb_003767_030 Hb_009421_090--Hb_003767_030 Hb_003207_210 Hb_003207_210 Hb_009421_090--Hb_003207_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105962 4.05401 23.0223 7.29009 0.0172912 0.0357389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.02375 1.85003

CAGE analysis