Hb_001001_010

Information

Type -
Description -
Location Contig1001: 4983-7191
Sequence    

Annotation

kegg
ID rcu:RCOM_1591450
description Patatin T5 precursor, putative
nr
ID XP_012071689.1
description PREDICTED: patatin-like protein 2 [Jatropha curcas]
swissprot
ID O48723
description Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1
trembl
ID A0A067KQ94
description Patatin OS=Jatropha curcas GN=JCGZ_04306 PE=3 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00215: 6153-6957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_010 0.0 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
2 Hb_010407_150 0.0596910712 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
3 Hb_005695_070 0.0864923531 - - Cysteine-rich RLK 29 [Theobroma cacao]
4 Hb_149985_030 0.1202672713 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
5 Hb_000349_170 0.1211271874 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
6 Hb_002995_010 0.1259220149 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
7 Hb_007076_010 0.131586124 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_004567_070 0.1330812788 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000035_140 0.1355537159 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
10 Hb_000111_240 0.1374851161 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
11 Hb_002311_500 0.138086189 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
12 Hb_151103_010 0.1409530022 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001396_040 0.1419403395 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
14 Hb_002205_160 0.1428896956 - - chalcone isomerase [Hibiscus cannabinus]
15 Hb_003688_220 0.1435562645 - - unknown [Populus trichocarpa]
16 Hb_005834_050 0.1444975918 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
17 Hb_000134_260 0.1471907806 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_140000_010 0.1476286926 - - receptor-kinase, putative [Ricinus communis]
19 Hb_001913_070 0.1485913665 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
20 Hb_001581_040 0.1489028244 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001001_010 Hb_001001_010 Hb_010407_150 Hb_010407_150 Hb_001001_010--Hb_010407_150 Hb_005695_070 Hb_005695_070 Hb_001001_010--Hb_005695_070 Hb_149985_030 Hb_149985_030 Hb_001001_010--Hb_149985_030 Hb_000349_170 Hb_000349_170 Hb_001001_010--Hb_000349_170 Hb_002995_010 Hb_002995_010 Hb_001001_010--Hb_002995_010 Hb_007076_010 Hb_007076_010 Hb_001001_010--Hb_007076_010 Hb_006789_030 Hb_006789_030 Hb_010407_150--Hb_006789_030 Hb_004567_070 Hb_004567_070 Hb_010407_150--Hb_004567_070 Hb_010407_150--Hb_005695_070 Hb_005834_050 Hb_005834_050 Hb_010407_150--Hb_005834_050 Hb_010407_150--Hb_002995_010 Hb_005695_070--Hb_149985_030 Hb_005695_070--Hb_000349_170 Hb_010267_020 Hb_010267_020 Hb_005695_070--Hb_010267_020 Hb_000200_270 Hb_000200_270 Hb_005695_070--Hb_000200_270 Hb_022406_010 Hb_022406_010 Hb_005695_070--Hb_022406_010 Hb_149985_030--Hb_022406_010 Hb_149985_030--Hb_000349_170 Hb_001913_070 Hb_001913_070 Hb_149985_030--Hb_001913_070 Hb_001606_040 Hb_001606_040 Hb_149985_030--Hb_001606_040 Hb_103709_010 Hb_103709_010 Hb_149985_030--Hb_103709_010 Hb_000349_170--Hb_001913_070 Hb_000349_170--Hb_022406_010 Hb_003767_030 Hb_003767_030 Hb_000349_170--Hb_003767_030 Hb_000388_040 Hb_000388_040 Hb_000349_170--Hb_000388_040 Hb_002995_010--Hb_005834_050 Hb_002311_500 Hb_002311_500 Hb_002995_010--Hb_002311_500 Hb_001776_130 Hb_001776_130 Hb_002995_010--Hb_001776_130 Hb_000035_150 Hb_000035_150 Hb_002995_010--Hb_000035_150 Hb_002817_030 Hb_002817_030 Hb_002995_010--Hb_002817_030 Hb_002995_010--Hb_004567_070 Hb_151103_010 Hb_151103_010 Hb_007076_010--Hb_151103_010 Hb_003688_220 Hb_003688_220 Hb_007076_010--Hb_003688_220 Hb_007076_010--Hb_010407_150 Hb_002200_020 Hb_002200_020 Hb_007076_010--Hb_002200_020 Hb_001396_040 Hb_001396_040 Hb_007076_010--Hb_001396_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27899 4.87166 0.887613 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.062458 0 0 0.353047 0.719587

CAGE analysis