Hb_151103_010

Information

Type -
Description -
Location Contig151103: 6576-8649
Sequence    

Annotation

kegg
ID rcu:RCOM_0788280
description hypothetical protein
nr
ID XP_002531117.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYP8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0788280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12792: 6763-8676 , PASA_asmbl_12793: 8462-8641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151103_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007076_010 0.0427229518 - - calcium-dependent protein kinase, putative [Ricinus communis]
3 Hb_003688_220 0.1184166417 - - unknown [Populus trichocarpa]
4 Hb_010407_150 0.1408997539 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
5 Hb_001001_010 0.1409530022 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
6 Hb_002200_020 0.144832135 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
7 Hb_028487_040 0.1455995415 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
8 Hb_009907_020 0.146457889 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
9 Hb_001776_130 0.1484533814 - - metallothionein [Hevea brasiliensis]
10 Hb_002311_500 0.1496116583 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
11 Hb_000454_080 0.1499334311 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
12 Hb_011794_050 0.1508527299 - - transcription factor, putative [Ricinus communis]
13 Hb_000567_330 0.1515828154 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
14 Hb_004567_070 0.1531720746 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008406_070 0.1536568272 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
16 Hb_000134_260 0.1545707668 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_000392_170 0.1545915652 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
18 Hb_000878_090 0.1574597589 - - sucrose-phosphatase family protein [Populus trichocarpa]
19 Hb_000320_040 0.1585359016 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000027_160 0.1596326302 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_151103_010 Hb_151103_010 Hb_007076_010 Hb_007076_010 Hb_151103_010--Hb_007076_010 Hb_003688_220 Hb_003688_220 Hb_151103_010--Hb_003688_220 Hb_010407_150 Hb_010407_150 Hb_151103_010--Hb_010407_150 Hb_001001_010 Hb_001001_010 Hb_151103_010--Hb_001001_010 Hb_002200_020 Hb_002200_020 Hb_151103_010--Hb_002200_020 Hb_028487_040 Hb_028487_040 Hb_151103_010--Hb_028487_040 Hb_007076_010--Hb_003688_220 Hb_007076_010--Hb_001001_010 Hb_007076_010--Hb_010407_150 Hb_007076_010--Hb_002200_020 Hb_001396_040 Hb_001396_040 Hb_007076_010--Hb_001396_040 Hb_003688_220--Hb_028487_040 Hb_000320_040 Hb_000320_040 Hb_003688_220--Hb_000320_040 Hb_001776_130 Hb_001776_130 Hb_003688_220--Hb_001776_130 Hb_000134_260 Hb_000134_260 Hb_003688_220--Hb_000134_260 Hb_011918_030 Hb_011918_030 Hb_003688_220--Hb_011918_030 Hb_010407_150--Hb_001001_010 Hb_006789_030 Hb_006789_030 Hb_010407_150--Hb_006789_030 Hb_004567_070 Hb_004567_070 Hb_010407_150--Hb_004567_070 Hb_005695_070 Hb_005695_070 Hb_010407_150--Hb_005695_070 Hb_005834_050 Hb_005834_050 Hb_010407_150--Hb_005834_050 Hb_002995_010 Hb_002995_010 Hb_010407_150--Hb_002995_010 Hb_001001_010--Hb_005695_070 Hb_149985_030 Hb_149985_030 Hb_001001_010--Hb_149985_030 Hb_000349_170 Hb_000349_170 Hb_001001_010--Hb_000349_170 Hb_001001_010--Hb_002995_010 Hb_000392_170 Hb_000392_170 Hb_002200_020--Hb_000392_170 Hb_002311_500 Hb_002311_500 Hb_002200_020--Hb_002311_500 Hb_000200_270 Hb_000200_270 Hb_002200_020--Hb_000200_270 Hb_015037_010 Hb_015037_010 Hb_002200_020--Hb_015037_010 Hb_000856_230 Hb_000856_230 Hb_002200_020--Hb_000856_230 Hb_002540_100 Hb_002540_100 Hb_002200_020--Hb_002540_100 Hb_002596_090 Hb_002596_090 Hb_028487_040--Hb_002596_090 Hb_000152_410 Hb_000152_410 Hb_028487_040--Hb_000152_410 Hb_005486_020 Hb_005486_020 Hb_028487_040--Hb_005486_020 Hb_001769_120 Hb_001769_120 Hb_028487_040--Hb_001769_120 Hb_003759_040 Hb_003759_040 Hb_028487_040--Hb_003759_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.05759 2.88303 1.08849 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167233 0.0438394 0 0.282628 0.624194

CAGE analysis