Hb_002596_090

Information

Type -
Description -
Location Contig2596: 113472-125036
Sequence    

Annotation

kegg
ID rcu:RCOM_1099410
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_012086210.1
description PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
swissprot
ID O22218
description Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1
trembl
ID B9T1L0
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_1099410 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26912: 119918-120649 , PASA_asmbl_26913: 120797-125019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002596_090 0.0 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
2 Hb_003029_010 0.0827528342 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
3 Hb_028487_040 0.0865538427 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
4 Hb_005486_020 0.0882702185 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
5 Hb_029095_010 0.0925571281 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
6 Hb_000152_410 0.0925596997 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_029584_110 0.0980598153 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
8 Hb_008202_010 0.1026602922 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_031685_010 0.1132830651 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_093364_010 0.1140899619 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
11 Hb_000990_040 0.1199706359 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
12 Hb_111997_010 0.1256623979 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
13 Hb_005016_080 0.1257051313 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
14 Hb_004040_010 0.1259070045 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
15 Hb_000732_160 0.1295877068 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
16 Hb_011794_050 0.1298027407 - - transcription factor, putative [Ricinus communis]
17 Hb_074966_010 0.1303534801 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_000340_380 0.1338678247 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
19 Hb_005888_050 0.1342869919 - - ATP binding protein, putative [Ricinus communis]
20 Hb_183025_010 0.13497297 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]

Gene co-expression network

sample Hb_002596_090 Hb_002596_090 Hb_003029_010 Hb_003029_010 Hb_002596_090--Hb_003029_010 Hb_028487_040 Hb_028487_040 Hb_002596_090--Hb_028487_040 Hb_005486_020 Hb_005486_020 Hb_002596_090--Hb_005486_020 Hb_029095_010 Hb_029095_010 Hb_002596_090--Hb_029095_010 Hb_000152_410 Hb_000152_410 Hb_002596_090--Hb_000152_410 Hb_029584_110 Hb_029584_110 Hb_002596_090--Hb_029584_110 Hb_003029_010--Hb_000152_410 Hb_003029_010--Hb_029584_110 Hb_003387_080 Hb_003387_080 Hb_003029_010--Hb_003387_080 Hb_003029_010--Hb_029095_010 Hb_005016_080 Hb_005016_080 Hb_003029_010--Hb_005016_080 Hb_003688_220 Hb_003688_220 Hb_028487_040--Hb_003688_220 Hb_028487_040--Hb_000152_410 Hb_028487_040--Hb_005486_020 Hb_001769_120 Hb_001769_120 Hb_028487_040--Hb_001769_120 Hb_003759_040 Hb_003759_040 Hb_028487_040--Hb_003759_040 Hb_000990_040 Hb_000990_040 Hb_005486_020--Hb_000990_040 Hb_005486_020--Hb_029095_010 Hb_001352_030 Hb_001352_030 Hb_005486_020--Hb_001352_030 Hb_093364_010 Hb_093364_010 Hb_005486_020--Hb_093364_010 Hb_111997_010 Hb_111997_010 Hb_005486_020--Hb_111997_010 Hb_029095_010--Hb_093364_010 Hb_029095_010--Hb_000990_040 Hb_031685_010 Hb_031685_010 Hb_029095_010--Hb_031685_010 Hb_004611_050 Hb_004611_050 Hb_029095_010--Hb_004611_050 Hb_000878_090 Hb_000878_090 Hb_000152_410--Hb_000878_090 Hb_000152_410--Hb_001769_120 Hb_000836_420 Hb_000836_420 Hb_000152_410--Hb_000836_420 Hb_000656_260 Hb_000656_260 Hb_029584_110--Hb_000656_260 Hb_008202_010 Hb_008202_010 Hb_029584_110--Hb_008202_010 Hb_183025_010 Hb_183025_010 Hb_029584_110--Hb_183025_010 Hb_026016_010 Hb_026016_010 Hb_029584_110--Hb_026016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0403847 16.7154 25.7153 8.21709 0.0160293 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.189726 0.199073 0.0572371 3.63343 12.6427

CAGE analysis