Hb_029584_110

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig29584: 57135-58635
Sequence    

Annotation

kegg
ID vvi:100247499
description uncharacterized LOC100247499
nr
ID XP_012076903.1
description PREDICTED: myb-like protein J [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067KNF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07386 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30926: 57954-58453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_110 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
2 Hb_000656_260 0.0807344279 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
3 Hb_003029_010 0.0813381788 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
4 Hb_008202_010 0.0907060291 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_002596_090 0.0980598153 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
6 Hb_183025_010 0.1020142031 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
7 Hb_026016_010 0.1044551168 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_012799_040 0.1102384704 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
9 Hb_000152_410 0.1190447135 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
10 Hb_036492_020 0.1194814455 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_000732_160 0.1252864868 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
12 Hb_008810_030 0.1275225885 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_000032_090 0.127960869 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004040_010 0.131178424 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
15 Hb_000402_180 0.1316237363 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
16 Hb_000110_040 0.1320641318 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
17 Hb_004393_030 0.1327811621 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
18 Hb_010904_010 0.1329377249 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
19 Hb_029095_010 0.1333703155 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
20 Hb_003970_010 0.137463025 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_029584_110 Hb_029584_110 Hb_000656_260 Hb_000656_260 Hb_029584_110--Hb_000656_260 Hb_003029_010 Hb_003029_010 Hb_029584_110--Hb_003029_010 Hb_008202_010 Hb_008202_010 Hb_029584_110--Hb_008202_010 Hb_002596_090 Hb_002596_090 Hb_029584_110--Hb_002596_090 Hb_183025_010 Hb_183025_010 Hb_029584_110--Hb_183025_010 Hb_026016_010 Hb_026016_010 Hb_029584_110--Hb_026016_010 Hb_012799_040 Hb_012799_040 Hb_000656_260--Hb_012799_040 Hb_036492_020 Hb_036492_020 Hb_000656_260--Hb_036492_020 Hb_006358_030 Hb_006358_030 Hb_000656_260--Hb_006358_030 Hb_000402_180 Hb_000402_180 Hb_000656_260--Hb_000402_180 Hb_002999_130 Hb_002999_130 Hb_000656_260--Hb_002999_130 Hb_000152_410 Hb_000152_410 Hb_003029_010--Hb_000152_410 Hb_003029_010--Hb_002596_090 Hb_003387_080 Hb_003387_080 Hb_003029_010--Hb_003387_080 Hb_029095_010 Hb_029095_010 Hb_003029_010--Hb_029095_010 Hb_005016_080 Hb_005016_080 Hb_003029_010--Hb_005016_080 Hb_135714_010 Hb_135714_010 Hb_008202_010--Hb_135714_010 Hb_005888_050 Hb_005888_050 Hb_008202_010--Hb_005888_050 Hb_003970_010 Hb_003970_010 Hb_008202_010--Hb_003970_010 Hb_008202_010--Hb_002596_090 Hb_111997_010 Hb_111997_010 Hb_008202_010--Hb_111997_010 Hb_028487_040 Hb_028487_040 Hb_002596_090--Hb_028487_040 Hb_005486_020 Hb_005486_020 Hb_002596_090--Hb_005486_020 Hb_002596_090--Hb_029095_010 Hb_002596_090--Hb_000152_410 Hb_183025_010--Hb_003029_010 Hb_183025_010--Hb_000656_260 Hb_170401_010 Hb_170401_010 Hb_183025_010--Hb_170401_010 Hb_000732_160 Hb_000732_160 Hb_183025_010--Hb_000732_160 Hb_073171_050 Hb_073171_050 Hb_183025_010--Hb_073171_050 Hb_002301_340 Hb_002301_340 Hb_026016_010--Hb_002301_340 Hb_189208_060 Hb_189208_060 Hb_026016_010--Hb_189208_060 Hb_011794_050 Hb_011794_050 Hb_026016_010--Hb_011794_050 Hb_026016_010--Hb_000402_180 Hb_026016_010--Hb_008202_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0217521 3.10369 3.25285 1.26507 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.346466 2.0055

CAGE analysis